View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20196_high_5 (Length: 438)
Name: NF20196_high_5
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20196_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 34593810 - 34593377
Alignment:
| Q |
9 |
gaagaatatcgttcacatttcagcatatgggctttagctaaggtatgatg-----aaacaaaatttagatactta-----------------gtattgtg |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
34593810 |
gaagaatatcgttcacatttcagcatatgggctttagctaaggtatgatgtgatgaaacaaaatttagatacttaccagcccttgacttctagtattgtg |
34593711 |
T |
|
| Q |
87 |
atggcattgccattgtcatgacatcctttaagcaaatcgtttttgatttttcactaaattggtttcttttgtatatactgataggctcctttattggttg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34593710 |
atggcattgccattgtcatgacatcctttaagcaaattgtttttgatttttcactaaattggtttcttttgtatataatgataggctcctttattggttg |
34593611 |
T |
|
| Q |
187 |
gttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaa |
286 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34593610 |
gttgtgatattcgtgcaatggataataccacatatgaattaataactaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaa |
34593511 |
T |
|
| Q |
287 |
ttactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgcagataaactaggagt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34593510 |
ttactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgcagacaaactaggagt |
34593411 |
T |
|
| Q |
387 |
tcaaggaaagaaagtgaaaagtactaatgatttg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34593410 |
tcaaggaaagaaagtgaaaagtactaatgatttg |
34593377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 34577845 - 34577750
Alignment:
| Q |
167 |
ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaagg |
262 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||| |||||||||| ||||||||||||| | |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
34577845 |
ataggctcctttattagttggatgtaatattcaagcaatggataataccacatatgaattgataagcaactcagaagttattgcagtaaaccaagg |
34577750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 32590078 - 32589981
Alignment:
| Q |
167 |
ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
264 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||| |||||||||| || ||| |||||| | |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
32590078 |
ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32589981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 32600526 - 32600429
Alignment:
| Q |
167 |
ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
264 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||| |||||||||| || ||| |||||| | |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
32600526 |
ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32600429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 32589905 - 32589864
Alignment:
| Q |
366 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaag |
407 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaag |
32589864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 32600353 - 32600312
Alignment:
| Q |
366 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaag |
407 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaag |
32600312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 32590213 - 32590173
Alignment:
| Q |
12 |
gaatatcgttcacatttcagcatatgggctttagctaaggt |
52 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
32590213 |
gaatatcgttcccatttcagcatctgggcattagctaaggt |
32590173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 32600661 - 32600621
Alignment:
| Q |
12 |
gaatatcgttcacatttcagcatatgggctttagctaaggt |
52 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
32600661 |
gaatatcgttcccatttcagcatctgggcattagctaaggt |
32600621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University