View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20196_high_6 (Length: 405)
Name: NF20196_high_6
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20196_high_6 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 109 - 383
Target Start/End: Original strand, 9580594 - 9580868
Alignment:
| Q |
109 |
ctaaagactataacttaactcataaaaagaaccaatagcatcaactagaagaaccttaacaaacagcaaaaataacaacattatcattaagcctactaaa |
208 |
Q |
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| T |
9580594 |
ctaaagactataacttaactcataaaaagaaccaagagcatcaactagaagaaccataacaaacagcaaaaataacaaaattatcattaagcctactaaa |
9580693 |
T |
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| Q |
209 |
acaaatatcatctttagatttaaataaatagttgtaaatttaacaatcaaacttcatgcctatatttttgagtcgtcgaccacattttgaggggcaaaaa |
308 |
Q |
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| T |
9580694 |
acaaatatcatctttaaatttaaataaatagttataaatttaacaatcaaacttcatgcctatatttttgagtcgtcaactacattttgagggggaaaaa |
9580793 |
T |
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| Q |
309 |
cccataaaacattttagaattcaaagcaccatatttataggatactggcaaacaatgcatccttgacacgagaag |
383 |
Q |
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| T |
9580794 |
cccataaagcatcttagaattcaaagcatgatatttttaggatgctagcaaacaatgcatccttgacacgagaag |
9580868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 9586074 - 9586450
Alignment:
| Q |
1 |
ctaaaatgtgtatacattgattttatgaaacaacacccaagtgcaatcataaacatattttt-tgcacccnnnnnnnnnnnnnnnnntatccaacatcca |
99 |
Q |
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| T |
9586074 |
ctaaaatgtgtatgcattcatgttatgaaacaacacccaagtgcaatcgtaaacatatttttatgcacgcaaaaaactaagac----tatgcaacatcca |
9586169 |
T |
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| Q |
100 |
aatgtctaactaaagactataacttaactcataaaaagaaccaatagcatcaactagaagaaccttaacaaacagcaaaaataacaacattatcattaag |
199 |
Q |
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| T |
9586170 |
aata-ctaattaaagactataacttaagtcatagaaagaaccaagagcatcaactagaagaaccataacaaacaacaaaaataacaacattatcattaag |
9586268 |
T |
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| Q |
200 |
cctactaaaacaaatatcatctttagatttaaataaatagttgtaaatttaacaatcaaacttcatgcctatatttttgagtcgtcgaccacattttgag |
299 |
Q |
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| T |
9586269 |
cctactaaaacaaatatcatctttaaatttaaataaatagttgtaaatttaacaatcaaacttcatgcctctatttttga-tcatcaaccacattttgag |
9586367 |
T |
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| Q |
300 |
gggcaaaaacccataaaacattttagaattcaaagcaccatatttataggatactggcaaacaatgcatccttgacacgagaag |
383 |
Q |
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| T |
9586368 |
ggg-gggaagccataaaacatcttcgaatttaaagcacaatattcataggatgctagcaaacaatgcatccttgacacgagaag |
9586450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 37932 - 37983
Alignment:
| Q |
158 |
agaaccttaacaaacagcaaaaat-aacaacattatcattaagcctactaaa |
208 |
Q |
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| T |
37932 |
agaaccataacaaacaacaaaaatgaacaacattatcattaagcctcctaaa |
37983 |
T |
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