View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20196_high_7 (Length: 319)
Name: NF20196_high_7
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20196_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 32 - 304
Target Start/End: Complemental strand, 13793385 - 13793112
Alignment:
| Q |
32 |
aatagcaacactaaataaaataacactataaaatcttaa-gaacatgtgcccttagcaacaaagaaaaacctccaatctcttcttctccttcttcaactt |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13793385 |
aatagcaacactaaataaaataacactataaaatcttaaagaacatgtgcccttagcaacaaagaaaaacctccaatctcttcttctccttcttcaactt |
13793286 |
T |
|
| Q |
131 |
tctctgccaaaacaacaacaacaaatggacacactcaacaccacactcctcattctcttcatcttcatcttcctccaaatcctctattcctttctcataa |
230 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13793285 |
tctctgccacaacaacaacaacaaatggacacactcaacactacactcctcattctcttcatcttcatcttcctccaaatcctctattcctttctcataa |
13793186 |
T |
|
| Q |
231 |
aacacaaacctcgacttccaccgggtccacgtggcctccccatcataggcaatctccatcaactgggtcaaaag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13793185 |
aacacaaacctcgacttccaccgggtccacgtggcctccccatcataggcaatctccatcaactgggtcaaaag |
13793112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University