View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20196_high_8 (Length: 276)
Name: NF20196_high_8
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20196_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 4179611 - 4179359
Alignment:
| Q |
9 |
atgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattggccatcaatttc |
108 |
Q |
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| T |
4179611 |
atgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattggccatcaatttc |
4179512 |
T |
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| Q |
109 |
attccagaaaacaaggtgagcctcatgatcatcatcgtgttcatttttattcgactcaaggaactcagataagcttgtagggtaatgagcctctaatagt |
208 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4179511 |
attccagaaaacaaggcgagcctcatgatcatcatcgtgttcatttttattcgactcaaggaactcagataagcttgtagggtaatgagcctctaagagt |
4179412 |
T |
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| Q |
209 |
cgaattccagaatcattagacacaatttccaatcctgttatgtcccttttttg |
261 |
Q |
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| T |
4179411 |
cgaattccagaatcattagacacaatttccaatcctgttatgtcccttttttg |
4179359 |
T |
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