View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20196_high_9 (Length: 215)

Name: NF20196_high_9
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20196_high_9
NF20196_high_9
[»] chr7 (8 HSPs)
chr7 (1-215)||(48917401-48917597)
chr7 (90-161)||(40422759-40422830)
chr7 (71-116)||(12306682-12306727)
chr7 (71-131)||(45004968-45005028)
chr7 (44-119)||(12306898-12306973)
chr7 (95-131)||(23441307-23441343)
chr7 (71-119)||(29829445-29829493)
chr7 (71-143)||(45369110-45369182)
[»] chr4 (8 HSPs)
chr4 (71-199)||(33560580-33560708)
chr4 (62-214)||(25318986-25319138)
chr4 (105-171)||(11271575-11271641)
chr4 (98-214)||(22683838-22683954)
chr4 (82-143)||(8330074-8330135)
chr4 (65-126)||(26617709-26617770)
chr4 (83-131)||(38498223-38498271)
chr4 (59-130)||(45329782-45329854)
[»] chr5 (7 HSPs)
chr5 (100-208)||(42439618-42439726)
chr5 (90-166)||(9449257-9449333)
chr5 (73-133)||(10898672-10898732)
chr5 (71-133)||(1105387-1105449)
chr5 (58-131)||(4848218-4848291)
chr5 (66-118)||(38045392-38045444)
chr5 (113-197)||(42194543-42194627)
[»] scaffold0024 (1 HSPs)
scaffold0024 (73-214)||(23588-23728)
[»] chr2 (8 HSPs)
chr2 (60-199)||(33502858-33502997)
chr2 (18-132)||(7630055-7630168)
chr2 (71-133)||(7630364-7630426)
chr2 (90-142)||(3476496-3476548)
chr2 (59-133)||(37561643-37561716)
chr2 (16-109)||(9943316-9943409)
chr2 (98-199)||(36979122-36979223)
chr2 (71-131)||(37420274-37420334)
[»] chr1 (8 HSPs)
chr1 (65-148)||(32088634-32088716)
chr1 (92-214)||(18325384-18325506)
chr1 (65-174)||(22383312-22383421)
chr1 (98-199)||(39289273-39289374)
chr1 (103-199)||(35592476-35592571)
chr1 (82-130)||(31362279-31362327)
chr1 (92-169)||(15477788-15477865)
chr1 (77-133)||(48635267-48635322)
[»] chr8 (8 HSPs)
chr8 (111-214)||(11791728-11791831)
chr8 (154-210)||(4279523-4279579)
chr8 (59-119)||(41614780-41614840)
chr8 (77-159)||(32927846-32927927)
chr8 (71-128)||(29979497-29979554)
chr8 (83-143)||(32056324-32056384)
chr8 (98-214)||(37684380-37684495)
chr8 (71-131)||(42455860-42455920)
[»] chr3 (5 HSPs)
chr3 (65-167)||(48089430-48089532)
chr3 (71-133)||(52925686-52925748)
chr3 (104-198)||(7298328-7298421)
chr3 (68-166)||(44771639-44771736)
chr3 (66-142)||(33548186-33548262)
[»] scaffold0393 (1 HSPs)
scaffold0393 (73-142)||(12373-12442)
[»] chr6 (6 HSPs)
chr6 (71-131)||(6653757-6653817)
chr6 (65-133)||(33141782-33141850)
chr6 (71-148)||(5724691-5724767)
chr6 (82-174)||(2234250-2234340)
chr6 (114-198)||(8007968-8008052)
chr6 (69-109)||(18690618-18690658)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 48917401 - 48917597
Alignment:
Q  1 atgaaaacaacttaacctatgtttggtttcacgtttggaacctccataattgatccgggaggtctaaaactgattttgacgtgtttggctgctctcaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48917401 atgaaaacaacttaacctatgtttggtttcacgtttggaacctccataattgatccgggaggtctaaaactgattttgacgtgtttggctgctctcaagt 48917500  T
Q  101 agaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaacta 200  Q
    ||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48917501 ag------------------aattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaacta 48917582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 40422759 - 40422830
Alignment:
Q  90 tgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagt 161  Q
    |||||||||||||||||||| ||||||| | ||||||||||||| | ||| |||||||| | ||||||||||    
T  40422759 tgctctcaagtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttgagt 40422830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 12306682 - 12306727
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcct 116  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||    
T  12306682 tgattttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 45004968 - 45005028
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattcta 131  Q
    |||||||||| ||||||| ||||||| | |||||||||| |||||| || |||||||||||    
T  45004968 tgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattcta 45005028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 12306898 - 12306973
Alignment:
Q  44 ccataattgatccgggaggtctaaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctcca 119  Q
    |||||||||||   ||||||  |||| |||||||||| ||||||| ||||||  |||||||||||| |||||||||    
T  12306898 ccataattgattttggaggtgcaaaattgattttgacatgtttggttgctcttgagtagaattgattttgcctcca 12306973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 23441343 - 23441307
Alignment:
Q  95 tcaagtagaattgatattgcctccataattgattcta 131  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  23441343 tcaagtacaattgattttgcctccataattgattcta 23441307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 29829493 - 29829445
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctcca 119  Q
    |||||||| | || |||| |||||||||||||||||||| |||||||||    
T  29829493 tgattttgtcatgcttggatgctctcaagtagaattgattttgcctcca 29829445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 45369110 - 45369182
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctag 143  Q
    |||||||||  ||||||| || ||||||||||||||||| |||| || | |||||||| |||| | |||||||    
T  45369110 tgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctag 45369182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 33560708 - 33560580
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatg 170  Q
    |||||||||| ||||||| ||||||| |||||||||||| ||||||| | |||||||||||||  ||||||||||||| | |||||||||||||||  ||    
T  33560708 tgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtg 33560609  T
Q  171 atttctaaactaaaatttatcgttcaact 199  Q
    |||| |||||| | ||| || ||||||||    
T  33560608 atttttaaactgacattcattgttcaact 33560580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 25318986 - 25319138
Alignment:
Q  62 gtctaaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagt 161  Q
    ||||| || |||||||||| ||||||| ||||||| |||||||||||| ||| ||||| ||||||||||||| | ||| |||||||| | || |||||||    
T  25318986 gtctagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagc-tttgagt 25319084  T
Q  162 ctaaacatga-tttctaaactaaaatttatcgttcaactaacatttacataaat 214  Q
    |||||  ||| ||| || ||| |||||||| |||||||| || ||||| |||||    
T  25319085 ctaaatgtgattttttatactgaaatttattgttcaactcacttttacgtaaat 25319138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 11271641 - 11271575
Alignment:
Q  105 ttgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatga 171  Q
    ||||| ||||||||| ||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtctaaacatga 11271575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 22683838 - 22683954
Alignment:
Q  98 agtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaa 197  Q
    |||| ||||||| ||||||||| |||| ||| |||| | |||||| ||| | | |||||||||||||||| |||||| || | | |||||||| ||||||    
T  22683838 agtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaa 22683937  T
Q  198 ctaacatttacataaat 214  Q
    ||  | |||||||||||    
T  22683938 ctcgcttttacataaat 22683954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 8330074 - 8330135
Alignment:
Q  82 tgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctag 143  Q
    ||||||| |||||||||||| |||||||  |||||||||||| ||||||||| | |||||||    
T  8330074 tgtttggttgctctcaagtaaaattgattctgcctccataatggattctaacttgaagctag 8330135  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 26617770 - 26617709
Alignment:
Q  65 taaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattga 126  Q
    ||||| |||||||||| ||||||| |||| |  | |||||||||| ||||||||||||||||    
T  26617770 taaaattgattttgacatgtttggatgcttttcaatagaattgattttgcctccataattga 26617709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 38498223 - 38498271
Alignment:
Q  83 gtttggctgctctcaagtagaattgatattgcctccataattgattcta 131  Q
    |||||||||||||  |||| |||| || |||||||||||||||||||||    
T  38498223 gtttggctgctcttgagtataatttattttgcctccataattgattcta 38498271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 45329782 - 45329854
Alignment:
Q  59 gaggtctaaaactgattttgacgtgtttggctgctctc-aagtagaattgatattgcctccataattgattct 130  Q
    ||||| ||||| ||| ||| || ||||||| ||||||| || ||||||| || ||||||||||||||||||||    
T  45329782 gaggtgtaaaattgactttaacatgtttggttgctctctaattagaatttattttgcctccataattgattct 45329854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 42439726 - 42439618
Alignment:
Q  100 tagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaact 199  Q
    |||||||||| || |||||| ||||||||||||| | ||||||| || | | |||||||||||||||| |||||| || |||||| ||||||||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaact 42439627  T
Q  200 aacatttac 208  Q
     || |||||    
T  42439626 cacttttac 42439618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 9449333 - 9449257
Alignment:
Q  90 tgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaa 166  Q
    ||||||||||||||||| || | ||||||| ||||||||| ||| |||||||| ||||| | |||||| ||||||||    
T  9449333 tgctctcaagtagaattaatttcgcctccaaaattgattccaacttaaagctaagatttgtagcttttaagtctaaa 9449257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 10898672 - 10898732
Alignment:
Q  73 attttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaac 133  Q
    |||||||| ||||||| ||||||| |||| ||||||| ||||||| | |||||||||||||    
T  10898672 attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaac 10898732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 1105387 - 1105449
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaac 133  Q
    |||||||||| | |||||||| ||||||||||||||||| |||| | || |||||||| ||||    
T  1105387 tgattttgacatttttggctgttctcaagtagaattgattttgctttcaaaattgattttaac 1105449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 4848291 - 4848218
Alignment:
Q  58 ggaggtctaaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattcta 131  Q
    |||||| | ||| ||||| |||| |||||| || ||||| |||||||||||| |||  ||||||||||||||||    
T  4848291 ggaggtgtgaaattgattctgacatgtttgactactctcgagtagaattgattttggttccataattgattcta 4848218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 38045392 - 38045444
Alignment:
Q  66 aaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctcc 118  Q
    |||| |||||||||| ||||||  || ||||||||||||||||| ||||||||    
T  38045392 aaaattgattttgacatgtttgaatgttctcaagtagaattgattttgcctcc 38045444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 42194627 - 42194543
Alignment:
Q  113 gcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaa 197  Q
    ||||||| | ||||||||||| | |||||||| ||| | |||||||||||||||  || ||| || ||| |||||||| ||||||    
T  42194627 gcctccagagttgattctaacctgaagctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 42194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 23728 - 23588
Alignment:
Q  73 attttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgat 172  Q
    |||||||| ||||||| ||| ||| | | |||||||| ||| |||||||| | |||||||| | |||||||||||| | |||||||| |||| || ||||    
T  23728 attttgacatgtttggttgccctcgaatggaattgattttgtctccataaataattctaac-tgaagctaggatttgtagcttttgaatctagacgtgat 23630  T
Q  173 ttctaaactaaaatttatcgttcaactaacatttacataaat 214  Q
    || || ||||||||||||| ||||||| || ||||| |||||    
T  23629 ttttagactaaaatttatcattcaactcacttttacttaaat 23588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 33502997 - 33502858
Alignment:
Q  60 aggtctaaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttga 159  Q
    |||| ||||| |||||||||| ||||||| ||||||| |||| || |||| |||| |||| ||||||||||||| | ||||||| ||||   | ||||||    
T  33502997 aggtgtaaaattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaatttcaagtttttga 33502898  T
Q  160 gtctaaacatgatttctaaactaaaatttatcgttcaact 199  Q
    ||||| |  |||||  || |||||||||||| ||||||||    
T  33502897 gtctagatgtgattattacactaaaatttattgttcaact 33502858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 7630055 - 7630168
Alignment:
Q  18 tatgtttggtttcacgtttggaacctccataattgatccgggaggtctaaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctc 117  Q
    ||||||||||| |||| ||||| | |||| || |||| | |||||| ||||| |||||||||| | ||||  | ||||  |||||||||| | |||||||    
T  7630055 tatgtttggttccacgattggagcatccaaaactgattctggaggtgtaaaattgattttgacat-tttgattcctctagagtagaattggttttgcctc 7630153  T
Q  118 cataattgattctaa 132  Q
    |||||||||||||||    
T  7630154 cataattgattctaa 7630168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 7630364 - 7630426
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaac 133  Q
    |||||||||| ||||||| |||| ||||||||||||||| |||||||||  || |||||||||    
T  7630364 tgattttgacatgtttggttgctttcaagtagaattgattttgcctccaggatagattctaac 7630426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 3476548 - 3476496
Alignment:
Q  90 tgctctcaagtagaattgatattgcctccataattgattctaacgtaaagcta 142  Q
    ||||||| |||| ||||||| ||||||||| ||||||||||||| ||||||||    
T  3476548 tgctctcgagtaaaattgattttgcctccagaattgattctaacttaaagcta 3476496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 37561643 - 37561716
Alignment:
Q  59 gaggtctaaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaac 133  Q
    ||||| ||||| |||||||||| ||||||  | | |||||||||| ||||| ||||||| |||||||||||||||    
T  37561643 gaggtgtaaaattgattttgacatgtttgaattc-ctcaagtagatttgattttgcctctataattgattctaac 37561716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 9943316 - 9943409
Alignment:
Q  16 cctatgtttggtttcacgtttggaacctccataattgatccgggaggtctaaaactgattttgacgtgtttggctgctctcaagtagaattgat 109  Q
    ||||||||||||| ||| |||||| |  ||| ||||||| | | |||| ||||| ||||||| || ||||||| ||||||||  ||||||||||    
T  9943316 cctatgtttggttccacatttggagcaaccaaaattgattctgaaggtgtaaaattgattttaacatgtttggttgctctcacttagaattgat 9943409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 36979122 - 36979223
Alignment:
Q  98 agtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaa 197  Q
    ||||||||| || |||||| || ||||||| ||||| | |||||||| | | | || ||||||||||||||||||||  | ||| ||| |||| ||||||    
T  36979122 agtagaatttattttgccttcagaattgatactaacttgaagctaggctctttagcgtttgagtctaaacatgattttcacacttaaaattattgttcaa 36979221  T
Q  198 ct 199  Q
    ||    
T  36979222 ct 36979223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 37420334 - 37420274
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattcta 131  Q
    |||||||||| ||||||||| | ||  |||||||||||| ||||||| | |||||||||||    
T  37420334 tgattttgacatgtttggcttccctagagtagaattgattttgcctctagaattgattcta 37420274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 32088716 - 32088634
Alignment:
Q  65 taaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggattt 148  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| || ||| || ||||||||||||| | ||||||||||||    
T  32088716 taaaattgattttgacatgtttggttgctctcaagtagaattgat-tttcctacaaaattgattctaacttgaagctaggattt 32088634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 18325506 - 18325384
Alignment:
Q  92 ctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatc 191  Q
    ||||| |||||||||||| ||||||||| | || | |||||| | ||||||||||||  ||||||||||||||||  |||||| || | |||||||||      
T  18325506 ctctcgagtagaattgattttgcctccaaagttaactctaacttgaagctaggatttgatgcttttgagtctaaatgtgatttttacattaaaatttact 18325407  T
Q  192 gttcaactaacatttacataaat 214  Q
    ||||| || || || ||||||||    
T  18325406 gttcatctcactttcacataaat 18325384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 22383421 - 22383312
Alignment:
Q  65 taaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtcta 164  Q
    ||||| ||||||||||  | |||| |||| || | || ||||||||||| || || |||||||||||||  |||| |||||||| | | |||||||||||    
T  22383421 taaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagtttttgagtcta 22383322  T
Q  165 aacatgattt 174  Q
    ||||||||||    
T  22383321 aacatgattt 22383312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 39289374 - 39289273
Alignment:
Q  98 agtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaa 197  Q
    |||| |||||||| | |||||| ||||||||||||| | ||||||| | || | ||||||||||| |||| |||||| || ||| ||| |||||||||||    
T  39289374 agtacaattgatagtacctccaaaattgattctaacttgaagctagaacttttagcttttgagtcaaaacgtgatttttacactgaaacttatcgttcaa 39289275  T
Q  198 ct 199  Q
    ||    
T  39289274 ct 39289273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 35592476 - 35592571
Alignment:
Q  103 aattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaact 199  Q
    ||||||| ||| ||| | ||||||||||||| |||||||||||||| | |||||||| ||||||||| |||| || ||| ||||||||  |||||||    
T  35592476 aattgattttgactctagaattgattctaacttaaagctaggatttttagcttttgactctaaacat-atttttacacttaaatttattcttcaact 35592571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 31362327 - 31362279
Alignment:
Q  82 tgtttggctgctctcaagtagaattgatattgcctccataattgattct 130  Q
    ||||||| |||| ||| ||||||||||| ||||||||||||||||||||    
T  31362327 tgtttggttgctttcatgtagaattgattttgcctccataattgattct 31362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 15477865 - 15477788
Alignment:
Q  92 ctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacat 169  Q
    ||||| |||| |||| || || ||||||||||||||||||||  ||| ||||||||  |  |||||||||||||||||    
T  15477865 ctctcgagtataattaatttttcctccataattgattctaacaaaaaactaggattcgtatcttttgagtctaaacat 15477788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 48635322 - 48635267
Alignment:
Q  77 tgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaac 133  Q
    |||| ||||||| || ||||||||||||||| | |||||| ||||||||||||||||    
T  48635322 tgacatgtttggatgttctcaagtagaattggttttgcct-cataattgattctaac 48635267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 11791831 - 11791728
Alignment:
Q  111 ttgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaactaacatttacat 210  Q
    |||||||||||| |||||||| | | |||||||||||| | |||||||||||| ||| |||||| || |||||||||||  ||||| || || ||||| |    
T  11791831 ttgcctccataactgattctaccttcaagctaggatttgtagcttttgagtctcaacgtgatttttacactaaaatttactgttcagcttacttttacgt 11791732  T
Q  211 aaat 214  Q
    ||||    
T  11791731 aaat 11791728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 4279579 - 4279523
Alignment:
Q  154 ttttgagtctaaacatgatttctaaactaaaatttatcgttcaactaacatttacat 210  Q
    |||| |||||||||||||||| || | |||||||||| |||||||| ||||||||||    
T  4279579 tttttagtctaaacatgatttatataataaaatttattgttcaacttacatttacat 4279523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 41614780 - 41614840
Alignment:
Q  59 gaggtctaaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctcca 119  Q
    ||||| ||||| |||||||||| ||||||| || | ||||||||||||||| |||||||||    
T  41614780 gaggtataaaattgattttgacttgtttggatggtttcaagtagaattgattttgcctcca 41614840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 32927846 - 32927927
Alignment:
Q  77 tgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttga 159  Q
    |||| ||||||| |||| || |||||||||||| ||||||| ||| |||||||| || | |||||||||||| | ||||||||    
T  32927846 tgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttga 32927927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 29979554 - 29979497
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgatt 128  Q
    |||||||||| ||||||| || ||||||||||||||| | ||||||||| ||| ||||    
T  29979554 tgattttgacatgtttggttggtctcaagtagaattggttttgcctccaaaatggatt 29979497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 32056324 - 32056384
Alignment:
Q  83 gtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctag 143  Q
    |||||| ||||||  |||| ||||||| || |||||||||||||||||||| | |||||||    
T  32056324 gtttggttgctctatagtaaaattgattttacctccataattgattctaactttaagctag 32056384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 37684380 - 37684495
Alignment:
Q  98 agtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaa 197  Q
    |||||||||||| ||| ||||| |||||||||| || | ||| |||||||| | |||||||| ||||||  ||||||  |  | |||||||||  |||||    
T  37684380 agtagaattgattttgtctccagaattgattct-acttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaatttataattcaa 37684478  T
Q  198 ctaacatttacataaat 214  Q
    || || |||||||||||    
T  37684479 ctcacttttacataaat 37684495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 42455860 - 42455920
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattcta 131  Q
    |||||||||| ||||||| |||| |  ||||| ||||||  ||||||||||||||||||||    
T  42455860 tgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 42455920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 48089532 - 48089430
Alignment:
Q  65 taaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtcta 164  Q
    ||||| |||||||| | ||||||| ||||||| |||| |||| || ||||||| | ||||||||| ||| | |||||||||||| | | |||||||||||    
T  48089532 taaaattgattttggcatgtttggttgctctcgagtataattaattttgcctcaagaattgattcaaaccttaagctaggatttgtcgtttttgagtcta 48089433  T
Q  165 aac 167  Q
    |||    
T  48089432 aac 48089430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 52925748 - 52925686
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaac 133  Q
    |||||||||| ||||||| |||||||| |||||||  || |||||||||||| ||||||||||    
T  52925748 tgattttgacatgtttggttgctctcacgtagaatcaattttgcctccataactgattctaac 52925686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 7298421 - 7298328
Alignment:
Q  104 attgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaac 198  Q
    |||||| ||| ||||| ||| ||||||||| | |||||||||||| | | |||||||||||| | |||||| | |||| |||||||| |||||||    
T  7298421 attgatgttgtctccagaatcgattctaacttgaagctaggatttgtagtttttgagtctaatcgtgattt-ttaactgaaatttattgttcaac 7298328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 44771639 - 44771736
Alignment:
Q  68 aactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaa 166  Q
    |||||||| |||| |||| ||||||| ||| ||||||||| | ||||||||  |||||||||| || |||| |||| |||| | |||||||| ||||||    
T  44771639 aactgattctgacatgttgggctgctatcaggtagaattggttttgcctccggaattgattct-acctaaatctagaatttgtagcttttgattctaaa 44771736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 33548186 - 33548262
Alignment:
Q  66 aaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagcta 142  Q
    |||| |||||||||| ||||||| |||| | ||||||||||||| || ||| || ||| ||||||||| | ||||||    
T  33548186 aaaattgattttgacatgtttggatgctattaagtagaattgatttttccttcaaaatggattctaacttgaagcta 33548262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 12442 - 12373
Alignment:
Q  73 attttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagcta 142  Q
    |||||||| ||||||| || ||||||||||||||||| ||||||||| || |||||||||| | ||||||    
T  12442 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 12373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 6653757 - 6653817
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattcta 131  Q
    |||||||||| ||||||| |||| |||||||||||||||  |||||| |||||||||||||    
T  6653757 tgattttgacttgtttggttgctgtcaagtagaattgattctgcctctataattgattcta 6653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 33141850 - 33141782
Alignment:
Q  65 taaaactgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaac 133  Q
    ||||| |||||||||  ||||||| |||||||||||| ||||||| || |||||| |||||||||||||    
T  33141850 taaaattgattttgatatgtttggttgctctcaagtataattgattttacctccagaattgattctaac 33141782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 5724767 - 5724691
Alignment:
Q  71 tgattttgacgtgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggattt 148  Q
    ||||| |||| ||||||| |||| ||| ||||||||||| ||||||||| |||||||||| || | ||||||||||||    
T  5724767 tgattctgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattct-acttgaagctaggattt 5724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 2234340 - 2234250
Alignment:
Q  82 tgtttggctgctctcaagtagaattgatattgcctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgattt 174  Q
    ||||||| ||||||  |||||||||||| ||||||||  ||||||||||||| | ||| || ||||| | ||  |||||||||||| ||||||    
T  2234340 tgtttggttgctcttgagtagaattgattttgcctcctgaattgattctaacatgaagttaagatttgtggc--ttgagtctaaacgtgattt 2234250  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 8008052 - 8007968
Alignment:
Q  114 cctccataattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaatttatcgttcaac 198  Q
    |||| ||||||||||||||| | ||| | ||||| || |||||||  ||||||||   |||||| ||| ||||||||||||||||    
T  8008052 cctctataattgattctaacttgaagttcggattgatagcttttgcctctaaacaatttttctacactcaaatttatcgttcaac 8007968  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 18690618 - 18690658
Alignment:
Q  69 actgattttgacgtgtttggctgctctcaagtagaattgat 109  Q
    |||||||||||| ||||||| |||| |||||||||||||||    
T  18690618 actgattttgacatgtttggttgctttcaagtagaattgat 18690658  T

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