View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20196_low_7 (Length: 367)
Name: NF20196_low_7
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20196_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41964671 - 41965025
Alignment:
| Q |
1 |
tatgatctctttctcaagtttcattccagtaacaatcagcttactgttttcctcttttggatgctctctcaaactctcatggtattcaaaccttctaggt |
100 |
Q |
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| T |
41964671 |
tatgatctctttctcaagtttcattccagtaacaatcagcttactgttttcctcttttggatgctctctcaaactctcatggtgttcaaaccttctaggt |
41964770 |
T |
|
| Q |
101 |
ggtccaaaaatgagaaaatggaaaattgaaacaagtagttgtaattcttaatttcaaattaggctgttaataatataggccttgacccttttcattaaaa |
200 |
Q |
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| T |
41964771 |
ggtcaaaaaatgagaaaatggaaaattgaaacaagtagttgtaatttttaatttcaaattaggctgttaataatataggccttgacccttttcattaaaa |
41964870 |
T |
|
| Q |
201 |
atatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggttagacttaagat |
300 |
Q |
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| T |
41964871 |
atatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggttagacttaagat |
41964970 |
T |
|
| Q |
301 |
tgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaatttt |
355 |
Q |
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| T |
41964971 |
tgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaatttt |
41965025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 1226126 - 1226428
Alignment:
| Q |
2 |
atgatctctttctcaagtttcattccagtaacaatcagcttactgttttcctcttttggatgctctctcaaactctcatggtattcaaaccttctaggtg |
101 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
1226126 |
atgatctctttctcaagtttcatttcagtaacaatcagcttactgttttcctcttttggatgctctctcaaacactcatggtgttcaaaccttctaggtg |
1226225 |
T |
|
| Q |
102 |
gtccaaaaatgagaaaatggaaaattgaaacaagtagttgtaattcttaatttcaaattaggctgttaataatataggccttgacccttttcattaaaaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226226 |
gtccaaaaatgagaaaatggaaaattgaaacaagtagttgtaatttttaatttcaaattaggctgttaataatataggccttgacccttttcattaaaaa |
1226325 |
T |
|
| Q |
202 |
tatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggttagacttaagatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226326 |
tatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaacacacttgcttagtgtggttagacttaagatt |
1226425 |
T |
|
| Q |
302 |
gac |
304 |
Q |
| |
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||| |
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|
| T |
1226426 |
gac |
1226428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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