View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_13 (Length: 388)
Name: NF20197_high_13
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 28259084 - 28258725
Alignment:
| Q |
10 |
aagaaaattgcaatatgtagagtcggatttgaacggataataattcatcttaaggagtgaaattttgactacttgaccnnnnnnnctcaataataatgca |
109 |
Q |
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| T |
28259084 |
aagaaaattgcaatatgtagagtcggatttgaacggataataattcatcttaaggagtgaaattttgactacttgatcaaaaaaactcaataataatgca |
28258985 |
T |
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| Q |
110 |
tgcaaattaagttaaaaaattggtaataattgattaacgagtctcgttatttggcattaagcttgtcattttctccaagttaaacattagattaccttta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28258984 |
tgcaaattaagttaaaaaattggtaataattgattaatgagtctggttatttggcattaagcttgtcattttatccaagttaaacattagattaccttta |
28258885 |
T |
|
| Q |
210 |
ctttcaatttaatcccgacggagagcttaattgatatataaatcaattttacactaacattcaatagaagtcttctatttatttcatataaaaacatgaa |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28258884 |
ctttcaatttaatcccgacggagagattaattgatatataaatcaattttacactaacattcaatagaagtcttctatttatttcatataaaaacatgaa |
28258785 |
T |
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| Q |
310 |
ttttgaggaccattttcattagttagatcatagacatattactaatataaaaccgactta |
369 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28258784 |
ttttgaggaccattttcattagatagatcatagacatattactaatataaaaccgactta |
28258725 |
T |
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