View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_high_17 (Length: 374)

Name: NF20197_high_17
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_high_17
NF20197_high_17
[»] chr5 (19 HSPs)
chr5 (20-370)||(37429269-37429628)
chr5 (38-232)||(37640547-37640741)
chr5 (20-232)||(37697462-37697674)
chr5 (20-232)||(37824570-37824782)
chr5 (51-162)||(37392262-37392373)
chr5 (51-232)||(37400116-37400297)
chr5 (51-232)||(37533775-37533956)
chr5 (51-232)||(37703343-37703524)
chr5 (38-232)||(37436382-37436576)
chr5 (51-232)||(37712299-37712480)
chr5 (299-365)||(37594866-37594932)
chr5 (299-365)||(37400364-37400430)
chr5 (128-162)||(37595069-37595103)
chr5 (299-365)||(37697329-37697395)
chr5 (299-365)||(37824437-37824503)
chr5 (128-365)||(37412657-37412894)
chr5 (308-365)||(37712166-37712223)
chr5 (317-365)||(37533642-37533690)
chr5 (321-365)||(37640414-37640458)
[»] chr3 (1 HSPs)
chr3 (38-162)||(14553783-14553907)
[»] chr4 (2 HSPs)
chr4 (59-232)||(16842188-16842361)
chr4 (196-260)||(24217189-24217253)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 37429628 - 37429269
Alignment:
Q  20 acttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttcta 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429628 acttggacctctcatacaccgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttcta 37429529  T
Q  120 tggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccacca-----ttatttt 214  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  37429528 tgctgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattatattatttt 37429429  T
Q  215 caaacctcacacacctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37429428 caaacctcacacacctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagt 37429329  T
Q  315 attttccttt----aataacctaataggccaagttccatcatcattgtttcatctcactc 370  Q
    ||||||||||    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  37429328 attttcctttaataaataacctaacaggccaagttccatcatcattgtttcatctaactc 37429269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 37640741 - 37640547
Alignment:
Q  38 ctgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatc 137  Q
    |||| ||||| | ||||||||| |||||||||||  | ||||||| |||||| || |||| ||||||| | || |||||  ||||  |  ||||||||||    
T  37640741 ctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaatttagatgggatggttcctctatc 37640642  T
Q  138 tttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 232  Q
    ||||||||||||||| ||||||||| | || ||||| ||   ||| ||  ||| |||||||||  |||||||| |||||||||||| ||||||||    
T  37640641 tttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaacctcaaacacctca 37640547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 37697674 - 37697462
Alignment:
Q  20 acttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttcta 119  Q
    |||| |||||||| |||||||| ||||| | ||||||||| |||||||||||  | |||||||||||||| |  ||||   |||||   || |||||  |    
T  37697674 acttagacctctcttacactgctttctcaggtgaaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgcaattttga 37697575  T
Q  120 tggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaac 219  Q
    |||  |  ||||||||||||||||||||||||||||||||||| | || || || || | ||| ||  |||  ||||||||  |||||||| ||||||||    
T  37697574 tgggatggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaac 37697475  T
Q  220 ctcacacacctca 232  Q
    |||| ||||||||    
T  37697474 ctcaaacacctca 37697462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 37824782 - 37824570
Alignment:
Q  20 acttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttcta 119  Q
    ||||||||||||| | | |||| || || | ||||||||| |||||||||||  | ||||||| |||||| || |||| ||||||| | || |||||  |    
T  37824782 acttggacctctcttcctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcatattgcaattttga 37824683  T
Q  120 tggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaac 219  Q
    |||  || ||||||||||||||||||||||||| ||||||||| | || ||||| ||    || ||  |||  ||||||||  |||||||| ||||||||    
T  37824682 tgggattgttcctctatctttgtggaacctcacccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaac 37824583  T
Q  220 ctcacacacctca 232  Q
    |||| ||||||||    
T  37824582 ctcaaacacctca 37824570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 37392262 - 37392373
Alignment:
Q  51 tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc 150  Q
    |||||||||| | || |||||| |||||||||||||||| || |||| ||||||| | || |||||  ||||  |  |||||||||||||||||||||||    
T  37392262 tgaaattcccaaatctataggccatttgaagtatcttactcaattagtcctttcatattgcaatttagatgggatggttcctctatctttgtggaacctc 37392361  T
Q  151 actcaactaaca 162  Q
    ||||||||||||    
T  37392362 actcaactaaca 37392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 37400116 - 37400297
Alignment:
Q  51 tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc 150  Q
    |||||||||||||||||||||| | |||||||||||||| |  ||||   |||||   || |||||  ||||  |  |||||||||||||||||||||||    
T  37400116 tgaaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaatttagatgggatggttcctctatctttgtggaacctc 37400215  T
Q  151 actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 232  Q
    || ||||||||| | || ||||| ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37400216 acccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37400297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 37533956 - 37533775
Alignment:
Q  51 tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc 150  Q
    ||||||||| |||||||||||  | ||||||| |||||| || |||| |||||||  ||| |||||  ||||  |  |||||||||||||||||||||||    
T  37533956 tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattttgatggaatggttcctctatctttgtggaacctc 37533857  T
Q  151 actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 232  Q
    || ||||||||| | || || || ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37533856 acccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37533775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 37703524 - 37703343
Alignment:
Q  51 tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc 150  Q
    ||||||||| |||||||||||  | ||||||| |||||| || |||| ||||||| | || |||||  ||||  |  ||||||||||||||||||| |||    
T  37703524 tgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcacattgcaatttagatgggatggttcctctatctttgtggaatctc 37703425  T
Q  151 actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 232  Q
    || ||||||||| | || ||||| ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37703424 acccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37703343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 37436576 - 37436382
Alignment:
Q  38 ctgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatc 137  Q
    |||| ||||| | ||||||||| |||||||||||  | ||||||| |||||| || |||| ||||| |   || |||||  ||||  |  ||||||||||    
T  37436576 ctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattttgatgggatggttcctctatc 37436477  T
Q  138 tttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 232  Q
    ||||||||||||||||||||||||| | || ||||| || |  || ||  |||   |||||||| |||||||| ||||||||| | |||||||||    
T  37436476 tttgtggaacctcactcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttcaaacccctcacacctca 37436382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 37712480 - 37712299
Alignment:
Q  51 tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc 150  Q
    ||||||||| |||||||||||  | ||||||| |||||| || |||| ||||||| | || |||||  ||||  |  ||||||||||||||||||| |||    
T  37712480 tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattttgatgggatggttcctctatctttgtggaatctc 37712381  T
Q  151 actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 232  Q
    || ||||||||| | || ||||| ||    || ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37712380 acccaactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37712299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 37594932 - 37594866
Alignment:
Q  299 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 365  Q
    |||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | ||||||||    
T  37594932 aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatct 37594866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 37400364 - 37400430
Alignment:
Q  299 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 365  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37400364 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37400430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 37595103 - 37595069
Alignment:
Q  128 ttcctctatctttgtggaacctcactcaactaaca 162  Q
    ||||||||||||||||||||||||| |||||||||    
T  37595103 ttcctctatctttgtggaacctcacccaactaaca 37595069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 37697395 - 37697329
Alignment:
Q  299 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 365  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37697395 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37697329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 37824503 - 37824437
Alignment:
Q  299 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 365  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37824503 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37824437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 365
Target Start/End: Original strand, 37412657 - 37412894
Alignment:
Q  128 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 227  Q
    |||||| |||||| ||||||||||||||||||||| | || ||||| ||   ||||||  |||  ||||| || ||| ||||| ||||||| ||| ||||    
T  37412657 ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcaca 37412756  T
Q  228 cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat 327  Q
     ||||||  ||| | ||||| | | |||  ||| | |||| |||||| | || ||||||| |||||||   |||||||| ||||||   |||||| |||     
T  37412757 tctcacttacttggatcttgaacaaaatgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaac 37412856  T
Q  328 aacctaataggccaagttccatcatcattgtttcatct 365  Q
    ||| | | ||| ||| |||| ||||||||||| |||||    
T  37412857 aacattacaggtcaaattccctcatcattgttccatct 37412894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 37712223 - 37712166
Alignment:
Q  308 atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 365  Q
    |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37712223 atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37712166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 37533690 - 37533642
Alignment:
Q  317 tttcctttaataacctaataggccaagttccatcatcattgtttcatct 365  Q
    |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37533642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 37640458 - 37640414
Alignment:
Q  321 ctttaataacctaataggccaagttccatcatcattgtttcatct 365  Q
    |||||| ||||||| ||||||||||||||||||| | ||||||||    
T  37640458 ctttaacaacctaacaggccaagttccatcatcactttttcatct 37640414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 14553907 - 14553783
Alignment:
Q  38 ctgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatc 137  Q
    |||| ||||| | ||||||||| |||||||||||  | ||||||| |||||| ||||||| ||||||| | || |||||  ||||  |  ||||||||||    
T  14553907 ctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatc 14553808  T
Q  138 tttgtggaacctcactcaactaaca 162  Q
    |||||||||||||||||||||||||    
T  14553807 tttgtggaacctcactcaactaaca 14553783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 16842188 - 16842361
Alignment:
Q  59 cctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaact 158  Q
    |||||||||||||  | || |||| |||||| ||||||| |||||||   || |||||  ||||  |  |||||||||||||||||||||||||||||||    
T  16842188 cctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacctcactcaact 16842287  T
Q  159 aacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 232  Q
    |||| | || || || || | ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  16842288 aacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 16842361  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 24217189 - 24217253
Alignment:
Q  196 gagattccaccattattttcaaacctcacacacctcactacctttggtcttggaaataataactt 260  Q
    ||||| ||| ||||| ||||||||||||||||||||||| |||| | ||||  || |||||||||    
T  24217189 gagatcccatcattactttcaaacctcacacacctcacttccttagatcttcaaattaataactt 24217253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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