View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_high_2 (Length: 880)

Name: NF20197_high_2
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_high_2
NF20197_high_2
[»] chr7 (21 HSPs)
chr7 (19-733)||(32726460-32727173)
chr7 (723-872)||(32726142-32726290)
chr7 (23-153)||(35938799-35938929)
chr7 (26-150)||(35981485-35981609)
chr7 (26-150)||(36002897-36003021)
chr7 (31-159)||(36218088-36218216)
chr7 (31-256)||(36222079-36222304)
chr7 (29-154)||(35976915-35977040)
chr7 (29-154)||(35998327-35998452)
chr7 (29-154)||(35957460-35957585)
chr7 (317-628)||(35980998-35981309)
chr7 (317-628)||(36002410-36002721)
chr7 (29-148)||(35946258-35946377)
chr7 (38-109)||(35951936-35952007)
chr7 (317-592)||(35957023-35957298)
chr7 (317-572)||(36218373-36218628)
chr7 (318-501)||(36223582-36223765)
chr7 (325-395)||(35946013-35946083)
chr7 (547-632)||(36223799-36223884)
chr7 (318-407)||(35976663-35976752)
chr7 (318-407)||(35998075-35998164)
[»] chr1 (3 HSPs)
chr1 (23-393)||(18124942-18125311)
chr1 (23-161)||(18117520-18117658)
chr1 (261-378)||(18117304-18117421)
[»] chr2 (2 HSPs)
chr2 (35-154)||(26329125-26329244)
chr2 (466-645)||(26329555-26329734)
[»] chr8 (1 HSPs)
chr8 (317-379)||(35406768-35406834)


Alignment Details
Target: chr7 (Bit Score: 687; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 19 - 733
Target Start/End: Complemental strand, 32727173 - 32726460
Alignment:
Q  19 tgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32727173 tgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaa 32727074  T
Q  119 tgttttgctttcttttccctttatcccaaagattatgccttctctattgataatatttgtagtctttggatggctcttggaattgtacaatctcggattg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32727073 tgttttgctttcttttccctttatcccaaagattatgccttctctagtgataatatttgtagtctttggatggcttttggaattgtacaatctcggattg 32726974  T
Q  219 gaattgaacaactcaaggatattgcaagagaatatatttgaggagttaaactctagattgtttcttcaagatttcgaacactttggctactgttttatgt 318  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726973 gaattgaacaactcaaggatattgcaagagaatatatt-gaggagttaaactctagattgtttcttcaagatttcgaacactttggctactgttttatgt 32726875  T
Q  319 tcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726874 tcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaag 32726775  T
Q  419 acaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcctt 518  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726774 acacgtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcctt 32726675  T
Q  519 gatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttcctttgataccctacctaactcgattg 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726674 gatagtcaaactttgctgaacacatggatatcaagatacaaatacttgcgatatttaggtttaagagattcttcctttgataccctacctaactcgattg 32726575  T
Q  619 ctaaattggagcatttgcgagttctcaaccttatcaataatcgcaaaatcagaagacttccccgatctatttgcaagatttgagactcattggatgcacg 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32726574 ctaaattggagcatttgcgagttctcaaccttatcaataatcgcaaaatcagaagacttccccaatctatttgcaagatttgagactcattggatgcacg 32726475  T
Q  719 gagattgaaacattg 733  Q
    |||||||||||||||    
T  32726474 gagattgaaacattg 32726460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 723 - 872
Target Start/End: Complemental strand, 32726290 - 32726142
Alignment:
Q  723 ttgaaacattgactattctttcatgtggtagtctagagtccttac-ttacctctttttatttttcctaaattacaggatttgataatttcagactgtgag 821  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||    
T  32726290 ttgaaaaattgactattctttcatgtggtagtctagagtccttaccttacctcttt--atttttcctaaattacaggatctgataatttcagactgtcag 32726193  T
Q  822 atgataaacctatcattatacaataaaagaccaatccaaagattgatgatg 872  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32726192 atgataaacctatcattgtacaataaaagaccaatccaaagattgatgatg 32726142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 35938929 - 35938799
Alignment:
Q  23 agagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgtt 122  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||| | || |||||||||||||||||||||||||| |||||||| ||||    
T  35938929 agagattctgagatatggaatttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgtt 35938830  T
Q  123 ttgctttcttttccctttatcccaaagatta 153  Q
    ||||||  |||||||| ||||||||||||||    
T  35938829 ttgcttatttttccctatatcccaaagatta 35938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 35981609 - 35981485
Alignment:
Q  26 gattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttg 125  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  35981609 gattctgagttatggaatctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttg 35981510  T
Q  126 ctttcttttccctttatcccaaaga 150  Q
    ||| ||||||||| |||||||||||    
T  35981509 cttacttttccctctatcccaaaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 36003021 - 36002897
Alignment:
Q  26 gattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttg 125  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  36003021 gattctgagttatggaatctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttg 36002922  T
Q  126 ctttcttttccctttatcccaaaga 150  Q
    ||| ||||||||| |||||||||||    
T  36002921 cttacttttccctctatcccaaaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 36218088 - 36218216
Alignment:
Q  31 tgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| |||| |||||||||||||      
T  36218088 tgagatatggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgt 36218187  T
Q  131 ttttccctttatcccaaagattatgcctt 159  Q
    |||||| | ||||||||||| ||| ||||    
T  36218188 ttttccttgtatcccaaagactatacctt 36218216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 36222079 - 36222304
Alignment:
Q  31 tgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttc 130  Q
    |||||| ||||| |||||||| ||||||| |||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||      
T  36222079 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 36222178  T
Q  131 ttttccctttatcccaaagattatgccttctctattgataatatttgtagtctttggatggctcttggaattgtacaatctcggattggaattgaacaac 230  Q
    |||||| | ||||||||||||||| | || ||||||| | | |||  | |||| ||||| ||||||||| | || |||||   || ||||| |||| | |    
T  36222179 ttttccttgtatcccaaagattattcattttctattgttgaaattacttgtctgtggatagctcttggattggttcaatccttgaatggaagtgaaaagc 36222278  T
Q  231 tcaaggatattgcaagagaatatatt 256  Q
    |  || ||||||||| ||||||||||    
T  36222279 tagagaatattgcaatagaatatatt 36222304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 35977040 - 35976915
Alignment:
Q  29 tctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctt 128  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||  | || ||||||||||||||||||||||| ||| |||| |||||||||| ||    
T  35977040 tctgagatgtggaatttagaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgttt 35976941  T
Q  129 tcttttccctttatcccaaagattat 154  Q
       |||||||||||||||||||||||    
T  35976940 atatttccctttatcccaaagattat 35976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 35998452 - 35998327
Alignment:
Q  29 tctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctt 128  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||  | || ||||||||||||||||||||||| ||| |||| |||||||||| ||    
T  35998452 tctgagatgtggaatttagaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgttt 35998353  T
Q  129 tcttttccctttatcccaaagattat 154  Q
       |||||||||||||||||||||||    
T  35998352 atatttccctttatcccaaagattat 35998327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 35957585 - 35957460
Alignment:
Q  29 tctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctt 128  Q
    |||||||| |||||||||||||| ||||   ||||||||||||||||  | || ||||| ||||||||||||||||| ||| |||| |||||||||||||    
T  35957585 tctgagatgtggaatttagaacaaaagattaatgatattttacctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgctt 35957486  T
Q  129 tcttttccctttatcccaaagattat 154  Q
      ||||||||||||||||||||||||    
T  35957485 atttttccctttatcccaaagattat 35957460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 317 - 628
Target Start/End: Complemental strand, 35981309 - 35980998
Alignment:
Q  317 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 416  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  |||||||| ||||| ||  ||||||  |||||    || ||| || | ||   |    
T  35981309 gttcaaagtacatgatttgatacatgatcttgcactttatgttggaaaagaggaatttgtggcattagatttgcatacacacaacatatctaagcaagta 35981210  T
Q  417 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 516  Q
    |||||  |  ||||||| ||||||||| |||  | |  || | | |||||||||||   |||  | |||||| | ||||||||||| |||||| |||| |    
T  35981209 agacatatttcagttgttgaaaataatccacaaggccatgttctgttccccaagtcacgaagcgtaagaactttattatttcccatcaaaggactgggtc 35981110  T
Q  517 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttcctttgataccctacctaactcgat 616  Q
    ||| |||| ||||| ||||  | | ||||||||||||||||||||||||  ||||||||| ||||||  ||||||| ||||||| |||||| || || ||    
T  35981109 ttgctagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaagtaattcttcatttgatatcctaccaaattctat 35981010  T
Q  617 tgctaaattgga 628  Q
    ||||||||||||    
T  35981009 tgctaaattgga 35980998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 317 - 628
Target Start/End: Complemental strand, 36002721 - 36002410
Alignment:
Q  317 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 416  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  |||||||| ||||| ||  ||||||  |||||    || ||| || | ||   |    
T  36002721 gttcaaagtacatgatttgatacatgatcttgcactttatgttggaaaagaggaatttgtggcattagatttgcatacacacaacatatctaagcaagta 36002622  T
Q  417 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 516  Q
    |||||  |  ||||||| ||||||||| |||  | |  || | | |||||||||||   |||  | |||||| | ||||||||||| |||||| |||| |    
T  36002621 agacatatttcagttgttgaaaataatccacaaggccatgttctgttccccaagtcacgaagcgtaagaactttattatttcccatcaaaggactgggtc 36002522  T
Q  517 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttcctttgataccctacctaactcgat 616  Q
    ||| |||| ||||| ||||  | | ||||||||||||||||||||||||  ||||||||| ||||||  ||||||| ||||||| |||||| || || ||    
T  36002521 ttgctagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaagtaattcttcatttgatatcctaccaaattctat 36002422  T
Q  617 tgctaaattgga 628  Q
    ||||||||||||    
T  36002421 tgctaaattgga 36002410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 35946377 - 35946258
Alignment:
Q  29 tctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctt 128  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||  | || ||||| ||||||||||||||||| ||| | || |||||||||||||    
T  35946377 tctgagatgtggaatttagaacaaaagaaagatgatatcttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgctt 35946278  T
Q  129 tcttttccctttatcccaaa 148  Q
      ||||| |||| |||||||    
T  35946277 atttttctctttttcccaaa 35946258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 35952007 - 35951936
Alignment:
Q  38 tggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctat 109  Q
    ||||||||||||||  ||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||    
T  35952007 tggaatttagaacaacagaaagatgatattttacctgccctgaaattaagctatgatcaaatgtcatcctat 35951936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 317 - 592
Target Start/End: Complemental strand, 35957298 - 35957023
Alignment:
Q  317 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 416  Q
    ||||||||||||||||||||||||||||||| || | |||||| | | |||||| |||||||||||||| || |||||| | ||||||||| | ||   |    
T  35957298 gttcaaagtacatgatttgatacatgatcttgctttgtatgtttctagagaggactttgtagcggtagactcgcatactcgtaatatacctcagcaagta 35957199  T
Q  417 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 516  Q
    || ||  || |||||||  || || ||||||| ||| ||| ||| ||||| ||||| | |||| |||||| |||  ||||||||||    ||||| || |    
T  35957198 aggcatttatcagttgttaaagatgattcacttgaccttgatttgttccctaagtctagaagtgtgagaagtatactatttcccatctttggagtaggtc 35957099  T
Q  517 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttc 592  Q
    |||| ||| ||| | | ||||| | || ||| || || |||||||| ||| | ||||| |||||||| ||||||||    
T  35957098 ttgaaagtgaaagtcttctgaataaattgatgtcgaggtacaaatatttgcgttatttgggtttaagtgattcttc 35957023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 572
Target Start/End: Original strand, 36218373 - 36218628
Alignment:
Q  317 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 416  Q
    ||||| ||| ||||||||||||||||||||| |  | |||||||| |||||||||||||||  |||||  || | |||  | |||||| |||||||  ||    
T  36218373 gttcagagtgcatgatttgatacatgatcttgcaatgtatgttgcaaaagaggagtttgtaatggtagtatctcgtacacgaaatatatctgaacaagca 36218472  T
Q  417 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 516  Q
    |  ||  || || |||| |||||  |||| || ||||  | ||| || ||||||||||||||| | |||||||||||||||||  |  ||||||||||||    
T  36218473 aagcatttatcaattgttgaaaaggattctcttgacaaagttttgtttcccaagtccaaaagtgtaagaactattttatttcctgtcgaaggagtgggcc 36218572  T
Q  517 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatat 572  Q
    |||| | | |||| ||| || | || ||| |||||| ||| ||||||||| |||||    
T  36218573 ttgacaatgaaacattggtgcatacgtgggtatcaaaatataaatacttgcgatat 36218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 318 - 501
Target Start/End: Original strand, 36223582 - 36223765
Alignment:
Q  318 ttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaa 417  Q
    |||||||| |||||||||||||| |||||| |  | ||||||||||| ||||||||||||  |||||  |||||||||  ||  ||||| |||||  |||    
T  36223582 ttcaaagtgcatgatttgatacacgatcttgcattgtatgttgcgaaggaggagtttgtaatggtagtctcacatactcagatcataccggaacaagcaa 36223681  T
Q  418 gacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttccca 501  Q
    | ||  || || |||| ||||||  |||||| | |  || ||| |||||||||||||||||| | ||||| ||| |||||||||    
T  36223682 ggcatatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtccaaaagtgtaagaacaattatatttccca 36223765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 35946083 - 35946013
Alignment:
Q  325 tacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatact 395  Q
    ||||||||||||||||||||||| |||| |||||||| | |||||| |||||| ||||||  |||||||||    
T  35946083 tacatgatttgatacatgatcttgctctgtatgttgcaagagaggactttgtaacggtaggctcacatact 35946013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 547 - 632
Target Start/End: Original strand, 36223799 - 36223884
Alignment:
Q  547 tatcaagatacaaatacttgtgatatttaggtttaagagattcttcctttgataccctacctaactcgattgctaaattggagcat 632  Q
    |||||||||| ||||||||| ||||||||  |||||| | |||||||||||| || || ||||| || |||| |||||||||||||    
T  36223799 tatcaagatataaatacttgcgatatttaaatttaagtggttcttcctttgacactctgcctaattcaattgttaaattggagcat 36223884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 35976752 - 35976663
Alignment:
Q  318 ttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacct 407  Q
    ||||| |||||||||||||||||||||||| |  | |||||| | | ||| || |||||||||||| | || |||||| |||||||||||    
T  35976752 ttcaatgtacatgatttgatacatgatcttgcattgtatgtttcaagagaagactttgtagcggtaaactcgcatactcggaatatacct 35976663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 35998164 - 35998075
Alignment:
Q  318 ttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacct 407  Q
    ||||| |||||||||||||||||||||||| |  | |||||| | | ||| || |||||||||||| | || |||||| |||||||||||    
T  35998164 ttcaatgtacatgatttgatacatgatcttgcattgtatgtttcaagagaagactttgtagcggtaaactcgcatactcggaatatacct 35998075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 23 - 393
Target Start/End: Complemental strand, 18125311 - 18124942
Alignment:
Q  23 agagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgtt 122  Q
    |||||||||||| | ||||||||| ||||| | ||||||||||||||||||||| | || || |||||||| ||||||||||||||||| |||||||| |    
T  18125311 agagattctgagctgtggaatttaaaacagcaaaaagatgatattttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgct 18125212  T
Q  123 ttgctttcttttccctttatcccaaagattatgccttctctattgataatatttgtagtctttggatggctcttggaattgtacaatctcggattggaat 222  Q
    ||||||  || ||||||||||| ||||||  | | |||| || |    |||||  |  ||||||| | || |||||| | || ||| | ||||  ||||     
T  18125211 ttgcttatttctccctttatcctaaagatattactttctgtagtttggatattattgctctttgggtagcccttggattagttcaaccccggaacggaag 18125112  T
Q  223 tgaacaactcaaggatattgcaagagaatatatttgaggagttaaactctagattgtttcttcaagatttcgaacactttggctactgttttatgttcaa 322  Q
    |||| ||||  ||||||||||||||||||||| |||| |||||||| ||  | |  |||||||| ||||||||| ||  |||||    || | | |||||    
T  18125111 tgaaaaactagaggatattgcaagagaatata-ttgatgagttaaattcacgttcatttcttcaggatttcgaagacaatggctggatttgtgtattcaa 18125013  T
Q  323 agtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacata 393  Q
    ||||||||||||| ||||||||||| |  | |||||||| |||| ||||||| ||| |||||| |||||||    
T  18125012 agtacatgatttggtacatgatctttcattgtatgttgctaaagcggagtttctagtggtagactcacata 18124942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 18117658 - 18117520
Alignment:
Q  23 agagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgtt 122  Q
    ||||| |||||||| |||| ||||||||| ||| || ||||||||||||||||| | || |||||||||||| |||||||||||||||| ||||| || |    
T  18117658 agagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgct 18117559  T
Q  123 ttgctttcttttccctttatcccaaagattatgccttct 161  Q
    |||||| | || |  | |||||||||||| || ||||||    
T  18117558 ttgcttacattgctatgtatcccaaagatcataccttct 18117520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 261 - 378
Target Start/End: Complemental strand, 18117421 - 18117304
Alignment:
Q  261 gagttaaactctagattgtttcttcaagatttcgaacactttggctactgttttatgttcaaagtacatgatttgatacatgatcttcctctttatgttg 360  Q
    ||||||||||| |||| |||| | || || ||| || ||||||| |||| ||  | |||||||||||| |||||| ||||||||||| || | |||||||    
T  18117421 gagttaaactcaagatcgtttttgcaggacttcaaagactttggatacttttgcaagttcaaagtacacgatttggtacatgatcttgctttctatgttg 18117322  T
Q  361 cgaaagaggagtttgtag 378  Q
    | ||| ||||||||||||    
T  18117321 caaaaaaggagtttgtag 18117304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 26329125 - 26329244
Alignment:
Q  35 atatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttctttt 134  Q
    ||||||||||||   || || |||||||||||||||||||   | ||||||||||||||||||||||||||||||||||| || ||||||||||  ||||    
T  26329125 atatggaatttaaggcaaaacaaagatgatattttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttattttt 26329224  T
Q  135 ccctttatcccaaagattat 154  Q
    |||||| |||||||||||||    
T  26329225 ccctttttcccaaagattat 26329244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 466 - 645
Target Start/End: Original strand, 26329555 - 26329734
Alignment:
Q  466 ccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatactt 565  Q
    ||||||| |||||| ||||||||||||| | ||||||  ||||||| ||  | |||||| ||||| |  || |  |||||||||||||||||||||||||    
T  26329555 ccaagtcgaaaagtgtgagaactattttgtgtcccatccaaggagtaggtgtcgatagtgaaactctcttggattcatggatatcaagatacaaatactt 26329654  T
Q  566 gtgatatttaggtttaagagattcttcctttgataccctacctaactcgattgctaaattggagcatttgcgagttctca 645  Q
    | | ||||||| |||||| |||||||| |||||    || ||||| |||||| |||||||||| | | | ||||||||||    
T  26329655 gcgctatttagatttaagtgattcttcatttgaggagctgcctaattcgatttctaaattggaccttcttcgagttctca 26329734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 35406768 - 35406834
Alignment:
Q  317 gttcaaagtacatgatttgatacatgat----cttcctctttatgttgcgaaagaggagtttgtagc 379  Q
    ||||||||||||||||||| | ||||||    ||| |||| |||||||| |||||||||||||||||    
T  35406768 gttcaaagtacatgatttggtgcatgatatatcttgctctctatgttgcaaaagaggagtttgtagc 35406834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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