View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_20 (Length: 365)
Name: NF20197_high_20
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 406586 - 406935
Alignment:
| Q |
1 |
ctcaaatttatttctcctagagcatacagtttgtaagcactagctagatggtatatcctatcaagatcatagcttgacttctaacatctagcttttcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
406586 |
ctcaaatttatttctcctagagcatacagtttgtaagcactagctagatggtatatcctatcaagatcatagcttgacttctaacatctagcttttcttg |
406685 |
T |
|
| Q |
101 |
tttgttaagaaacaagtttgaaacatagtgaaccaagtttttaagatggttataacacttggttgagctaaaagattaaagaagttgaaggtctatggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
406686 |
tttgttaagaaacaagtttgaaacatagtgaaccaagtttttaagatggttataacacttggttgagctaaaagattaaagaagttgaaggtttatggtt |
406785 |
T |
|
| Q |
201 |
tgaatcatgataagagagaaaatagatattgagttcgatacttggttcacactaaaaaatactcattccatcctaaaataattgactttgtttgacaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
406786 |
tgaatcatgataagagagaaaatagatattgagttcgatacttggttcacactaaaaaatactcattccatcctaaaataattgactttgtttgacaata |
406885 |
T |
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| Q |
301 |
tgcattattcaaatcatatactttaatcatattttttcattgccataact |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
406886 |
tgcattattcaaatcatatactttaatcatattttttcattgccataact |
406935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 49431553 - 49431507
Alignment:
| Q |
290 |
gtttgacaatatgcattattcaaatcatatactttaatcatattttt |
336 |
Q |
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||||||||||||||| ||||||||| | ||||||| ||||||||||| |
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| T |
49431553 |
gtttgacaatatgcactattcaaattacatacttttatcatattttt |
49431507 |
T |
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