View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_21 (Length: 363)
Name: NF20197_high_21
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 41 - 273
Target Start/End: Original strand, 11154878 - 11155125
Alignment:
| Q |
41 |
attcaagcagcaccaaagaaaccaaatcttcagaacgatgaacaaagtgctccaa---------------cagaggaatctgaacttcctggtattccaa |
125 |
Q |
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| T |
11154878 |
attcaagcagcaccaaagaaaccaaatcttcagaacgatgaacaaagtgctccaatagcaacaacaacaacagaggaatctgaacttcctggtattccaa |
11154977 |
T |
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| Q |
126 |
ttgctcctttgaatgaaaataatagcgagaaacaaagtgttatattcattctcgaaaaagcttctttagaagtcgctaaagttggcaaggtacgttttta |
225 |
Q |
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| T |
11154978 |
ttgctcctttaagtgaaaagaataacgagaaacaaagtgttatattcattctcgaaaaagcttctttagaagtcgctaaagttggcaaggtacgttttta |
11155077 |
T |
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| Q |
226 |
tcgcgcttttattcaattattttaccttatctattcatatatacactt |
273 |
Q |
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| T |
11155078 |
tcgcgcttttattcaattatttgaccttatctattcatatatacactt |
11155125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 43952186 - 43951963
Alignment:
| Q |
51 |
caccaaagaaaccaaatcttcagaacgatgaacaaagtgctccaacagaggaatctgaacttcctggtattccaattgctcctttgaatgaaaataatag |
150 |
Q |
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| T |
43952186 |
caccgaagaaaccaaatcttcataacgatgaaccaagtgcgccaacagaggaatctgaacttcctggtattccaattgctcctttgaatgaaaagaacag |
43952087 |
T |
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| Q |
151 |
cgagaaacaaagtgttatattcattctcgaaaaagcttctttagaagtcgctaaagttggcaaggta----cgtttttatcgcgcttttattcaattatt |
246 |
Q |
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| T |
43952086 |
tgagaaacaaggtgttatattcattctcgaaaaagcttctttagaagtcgctaaagttggcaaggtactttcgtttttatcgtctttttattgaattatt |
43951987 |
T |
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| Q |
247 |
ttaccttatctattcatatataca |
270 |
Q |
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| T |
43951986 |
tgatcttatttattgatatataca |
43951963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 43951943 - 43951889
Alignment:
| Q |
275 |
tttgagtttatttacggcagaaaatagcttataatatggatataagttgtttttg |
329 |
Q |
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||||||||||| || ||||||||| ||||||||||||| | |||||||||||||| |
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| T |
43951943 |
tttgagtttatgtatggcagaaaacagcttataatatgtacataagttgtttttg |
43951889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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