View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_25 (Length: 332)
Name: NF20197_high_25
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 1702356 - 1702682
Alignment:
| Q |
1 |
accatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctattctacacaacatcatgcctaccaatgttatcacccacccact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702356 |
accatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctactctacacaacatcatgcctaccaatgttatcacccacccact |
1702455 |
T |
|
| Q |
101 |
caaaagttgtatctctcaagacacgtcacctttcatgagtcactctttcaatttt-attgaatctttatgcctcgtccacgtcttctattttaaattcaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702456 |
caaaagttgtatctctcaagacacgtcacctttcatgagtcactctttccatttttattgaatctttatgcctcgtccacgtcttctattttaaattcaa |
1702555 |
T |
|
| Q |
200 |
actcaaacactaacaagcactttccttctcatcatcctcttattattcaacaccttagccatcctattattccttcaccttctcctcaaaattcaaactc |
299 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1702556 |
actcaaacactagcaaacactttccttctcatcatcctcttattattcaacaccttaaccatcctattattcctccaccttctcctcaaaattcaaactc |
1702655 |
T |
|
| Q |
300 |
atcacttatccctacacttcttctctc |
326 |
Q |
| |
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||||||||||||||||| |||| |||| |
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| T |
1702656 |
atcacttatccctacacctcttatctc |
1702682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 26592018 - 26591960
Alignment:
| Q |
65 |
caacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagaca |
123 |
Q |
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|||||||||||||||||||| || || || ||||||||||| || |||||||| ||||| |
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| T |
26592018 |
caacatcatgcctaccaatgctaccatcctcccactcaaaaattatatctctccagaca |
26591960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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