View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_27 (Length: 316)
Name: NF20197_high_27
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 389647 - 389350
Alignment:
| Q |
1 |
cctttctgacacaagaggctgtttcataaacccttaattaagctataaaatatagttaattatgtagcattgcccttttataaatttttgtgatatacta |
100 |
Q |
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| T |
389647 |
cctttctgacacaagaggctgtttcataaacccttagttaagctataaaatatagttaattatgtaacattgcctttttataaatttttgtgatatacta |
389548 |
T |
|
| Q |
101 |
ttatatgttacagatttagagtaaagaatacgtttaagagtgtgaaaaggaggagagggatgagacagaggcaacaaccaatataatgatgggatgtaac |
200 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
389547 |
ttatatgttagagatttagagtaaagaatacgtttgagagtgtgaaaaggaggagagggatgagacagaggcaacaaccaatataatgatgggatgtaac |
389448 |
T |
|
| Q |
201 |
tacttgttatattaattctacttcaagagaaaacaactgcagactagaattcccactttatcatggaacagttacctgcaagattctattgctcaact |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
389447 |
tacttgttatattaattctacttcaagagaaaacaactgcagactagaattcccactttatcatggaacagttacctgcaagattctattgctcaact |
389350 |
T |
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