View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_36 (Length: 282)
Name: NF20197_high_36
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_36 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 2516392 - 2516663
Alignment:
| Q |
11 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516392 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcaagagtacagcatcaagtgtctttcccccaacattctcaaagt |
2516491 |
T |
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| Q |
111 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatccaccggttactggtatgtctcatgtttattgtaacacggtaactatactttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516492 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatccaccggttactggtatgtctcatgtttattgtaacacggtaactatactttt |
2516591 |
T |
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| Q |
211 |
catgtcaacaaacatattgaactaaaaaatttcgactgcatcacttatgtactgacctttttaatgctgcat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516592 |
catgtcaacaaacatattgaactaaaaaatttcgactgcatcacttatgtactgacctttttaatgctgcat |
2516663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 2432602 - 2432455
Alignment:
| Q |
11 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagt |
110 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2432602 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
2432503 |
T |
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| Q |
111 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatc |
158 |
Q |
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| T |
2432502 |
aaatgtcaatgccttctggaaagtacctaatttacatacattgatatc |
2432455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 2429620 - 2429473
Alignment:
| Q |
11 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagt |
110 |
Q |
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||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2429620 |
agattgtactgtgagatcattccacacacaggtatccgcccatggagtttcatattcaagagtacagcatcaagtgtctttccccccacattctcaaagt |
2429521 |
T |
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| Q |
111 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatc |
158 |
Q |
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| T |
2429520 |
aaatgtcaatgccttctggaaagtatctagtttacataaattgatatc |
2429473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 2435963 - 2435815
Alignment:
| Q |
11 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagt |
110 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||| | |||||||| | ||||||||||||||||| || || |||||||||||||||| |
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| T |
2435963 |
agattgtactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
2435864 |
T |
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| Q |
111 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatcc |
159 |
Q |
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| T |
2435863 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatcc |
2435815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 2512121 - 2512277
Alignment:
| Q |
11 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||| |||||||||||||| || ||||| |||||||||| |
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| T |
2512121 |
agattgtactgtgagatcattccacacacaggtatgcgaccatgtagtttcatgttcaagagtacggcatcaagtgtcttgcctccaacgttctcaaagt |
2512220 |
T |
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| Q |
111 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatccaccggtta |
167 |
Q |
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||| |||||| ||||||||||||| ||| |||| | ||||||||||||||| |||| |
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| T |
2512221 |
aaacgtcaattccttctggaaagtgcctgatttccccaaattgatatccaccagtta |
2512277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 2496819 - 2496951
Alignment:
| Q |
11 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagt |
110 |
Q |
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||||| |||||||||||||||||||| ||||||||||||| |||| | |||| ||| |||||||||||||||||||||| || |||||||||||||||| |
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| T |
2496819 |
agattgtactgtgagatcattccacatgcaggtatgcggccgtggactctcatgttcaagagtacagcatcaagtgtcttgcctccaacattctcaaagt |
2496918 |
T |
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| Q |
111 |
aaatgtcaatgccttctggaaagtacctaattt |
143 |
Q |
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|||| ||||||||||| || |||| ||| |||| |
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| T |
2496919 |
aaatatcaatgccttcagggaagtgcctgattt |
2496951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 2505500 - 2505650
Alignment:
| Q |
11 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagt |
110 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| || || | | |||| ||| ||||||| |||||||||||||| || || || |||||||||| |
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| T |
2505500 |
agattgtactgtgagatcattccacacacaggtatgcgaccttgtaatctcatgttcaagagtacggcatcaagtgtcttgccaccgacgttctcaaagt |
2505599 |
T |
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| Q |
111 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatccac |
161 |
Q |
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||| ||||||||||||||||||| ||| ||| ||||||| ||||| |||| |
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| T |
2505600 |
aaacatcaatgccttctggaaagtgcctgattcacataaaatgataaccac |
2505650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 41540509 - 41540465
Alignment:
| Q |
95 |
ccaacattctcaaagtaaatgtcaatgccttctggaaagtaccta |
139 |
Q |
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| T |
41540509 |
ccaacattgtcaaagtatatgtcaattccttcgggaaagtaccta |
41540465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 1083134 - 1083170
Alignment:
| Q |
89 |
tttcccccaacattctcaaagtaaatgtcaatgcctt |
125 |
Q |
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| T |
1083134 |
tttcccccaacattgtcaaagttaatgtcaatgcctt |
1083170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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