View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_high_37 (Length: 267)

Name: NF20197_high_37
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_high_37
NF20197_high_37
[»] chr1 (3 HSPs)
chr1 (18-267)||(47377474-47377723)
chr1 (167-262)||(4522584-4522680)
chr1 (100-179)||(4065854-4065933)
[»] chr7 (4 HSPs)
chr7 (108-261)||(46383476-46383630)
chr7 (107-216)||(37575515-37575624)
chr7 (150-264)||(24912082-24912196)
chr7 (185-264)||(36777896-36777976)
[»] chr3 (3 HSPs)
chr3 (101-259)||(46103665-46103823)
chr3 (100-147)||(32103978-32104025)
chr3 (214-262)||(42913312-42913360)
[»] chr5 (2 HSPs)
chr5 (96-262)||(5006709-5006878)
chr5 (160-257)||(28497457-28497556)
[»] chr4 (1 HSPs)
chr4 (126-215)||(39721530-39721619)
[»] chr2 (1 HSPs)
chr2 (100-176)||(16492143-16492219)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 47377474 - 47377723
Alignment:
Q  18 gttcgagcatggatgcagtacatgactaggtgtggctatcgtcaaaccaaatttctttcaatttgnnnnnnnacgtacgagaatgtctataaaaatgaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  47377474 gttcgagcatggatgcagtacatgactaggtgtggctatcgtcaaaccaaatttctttcaatttgtttttttacgtacgagaatgtctataaaaatgaaa 47377573  T
Q  118 tttttgaagaagttgatggcttattttgttcaaattaacgattgttagggttataaatagacatgagctaataaaacttgcccaaataaaactactaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47377574 tttttgaagaagttgatggcttattttgttcaaattaacgattgttagggttataaatagacatgagctaataaaacttgcccaaataaaactactaaac 47377673  T
Q  218 tgttattttgaatgaaataatatcgtctttaatttaattgagcaaatatt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47377674 tgttattttgaatgaaataatatcgtctttaatttaattgagcaaatatt 47377723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 4522680 - 4522584
Alignment:
Q  167 gttataaatagacatgagctaataaaacttgcccaaataaaac-tactaaactgttattttgaatgaaataatatcgtctttaatttaattgagcaa 262  Q
    |||||||||||||||| |||||||||||||||||| ||||||| |  ||||||||||||||| ||||||  || | ||||||||||| |||||||||    
T  4522680 gttataaatagacatgggctaataaaacttgcccacataaaactttttaaactgttattttgtatgaaacgatgtagtctttaattttattgagcaa 4522584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 4065933 - 4065854
Alignment:
Q  100 atgtctataaaaatgaaatttttgaagaagttgatggcttattttgttcaaattaacgattgttagggttataaatagac 179  Q
    |||| ||||| |||||||| ||  || |||||  ||||||||||||||| ||||||| ||||||| ||||| ||||||||    
T  4065933 atgtttataagaatgaaatgttgaaaaaagtttgtggcttattttgttctaattaaccattgttaaggttacaaatagac 4065854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 46383630 - 46383476
Alignment:
Q  108 aaaaatgaaatttttgaagaagttgatggcttattttgttcaaattaacgattgttagggttataaatagacatgagctaataaaacttgcccaaataaa 207  Q
    ||||||||| | || || ||||||||| |||||||||||   ||||||| |||||||||||||||||||||||| | ||| ||||| |||||||||||||    
T  46383630 aaaaatgaagtattagaggaagttgatagcttattttgtctcaattaacaattgttagggttataaatagacataaactagtaaaatttgcccaaataaa 46383531  T
Q  208 actact-aaactgttattttgaatgaaataatatcgtctttaatttaattgagca 261  Q
    |  ||| ||||||||||||| || |||||| ||   |||||||||| ||||||||    
T  46383530 ataactaaaactgttattttaaaagaaatagtacaatctttaatttcattgagca 46383476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 37575624 - 37575515
Alignment:
Q  107 taaaaatgaaatttttgaagaagttgatggcttattttgttcaaattaacgattgttagggttataaatagacatgagctaataaaacttgcccaaataa 206  Q
    |||||||||||| || |||||||||| ||||||||||||||  ||||||  ||||| |||||| || || ||| ||| ||||||||||| | | ||||||    
T  37575624 taaaaatgaaatgttagaagaagttggtggcttattttgtttcaattaataattgtcagggttgtagatggacttgaactaataaaactagtctaaataa 37575525  T
Q  207 aactactaaa 216  Q
    ||||||||||    
T  37575524 aactactaaa 37575515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 24912196 - 24912082
Alignment:
Q  150 aattaacgattgttagggttataaatagacatgagctaataaaacttgcccaaataaaactactaaac-tgttattttgaatgaaataatatcgtcttta 248  Q
    ||||||| |||||||||||||||| |||||||   |||||||   |||||||||||||| |||||||  ||||||||||| ||||||| ||| || ||||    
T  24912196 aattaacaattgttagggttataa-tagacatacactaataatttttgcccaaataaaattactaaaaatgttattttgattgaaatagtatagttttta 24912098  T
Q  249 atttaattgagcaaat 264  Q
    |||| |||||||||||    
T  24912097 atttcattgagcaaat 24912082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 36777896 - 36777976
Alignment:
Q  185 ctaataaaacttgcccaaataaaactactaaa-ctgttattttgaatgaaataatatcgtctttaatttaattgagcaaat 264  Q
    ||||||||| |||| |||| |||||||||||| || || |||| ||||||||| ||| ||||||||||| |||||||||||    
T  36777896 ctaataaaatttgctcaaacaaaactactaaaactattgttttcaatgaaatagtatagtctttaatttcattgagcaaat 36777976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 46103665 - 46103823
Alignment:
Q  101 tgtctataaaaatgaaatttttgaagaagttgatggcttattttgttcaaattaacgattgttagggttataaatagacatgagctaataaaacttgccc 200  Q
    ||||||||||| |||| | || || |||||||| || ||||||||| | ||| | | |||||||||||||||||| ||||||   |||| ||| ||| ||    
T  46103665 tgtctataaaagtgaagtgttagaggaagttgacggtttattttgtcccaatcagcaattgttagggttataaattgacatggagtaatgaaatttg-cc 46103763  T
Q  201 aaataaaactact-aaactgttattttgaatgaaataatatcgtctttaatttaattgag 259  Q
     |||||||||| | ||| || |||||| ||||||||| ||| ||||||||||| ||||||    
T  46103764 taataaaactattaaaaatgatattttaaatgaaatagtatagtctttaatttcattgag 46103823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 32104025 - 32103978
Alignment:
Q  100 atgtctataaaaatgaaatttttgaagaagttgatggcttattttgtt 147  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  32104025 atgtctataaaaatgaaatgtttgaagaagttcatggctcattttgtt 32103978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 42913360 - 42913312
Alignment:
Q  214 aaactgttattttgaatgaaataatatcgtctttaatttaattgagcaa 262  Q
    ||||||||||||||||||||||| | | || |||||||| |||||||||    
T  42913360 aaactgttattttgaatgaaatagtttagtttttaatttcattgagcaa 42913312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 262
Target Start/End: Complemental strand, 5006878 - 5006709
Alignment:
Q  96 gagaatgtctataaaaatgaaatttttgaagaagttgatggcttattttgt-tcaaattaacgattgttagggttataa---atagacatgagctaataa 191  Q
    |||||||| || ||||||||| | || ||  ||||||| || ||||||||| | |||| ||| |||||||| |||||||   ||||||||   | |||||    
T  5006878 gagaatgtgtagaaaaatgaagtgttggagaaagttgacggtttattttgtcttaaatcaacaattgttagagttataataaatagacatagaccaataa 5006779  T
Q  192 aacttgcccaaataaaactact-aaactgttattttgaatgaaataatatcgtctttaatttaattgagcaa 262  Q
    || |||| |||||||||||||| ||||||||||||||||  ||||| ||  ||||||||||| |||||||||    
T  5006778 aatttgctcaaataaaactactaaaactgttattttgaaataaatagta--gtctttaatttcattgagcaa 5006709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 28497556 - 28497457
Alignment:
Q  160 tgttagggttataaatagacatgagctaataaaacttgcccaaataaaactacta-aactgttattttgaatgaaataat--atcgtctttaatttaatt 256  Q
    ||||||| ||| |||| ||||||||||||||||||    |||||||||||||||| ||||||| || ||| |||||||||  || ||||||||||| |||    
T  28497556 tgttaggattacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgtt-ttatgagtgaaataatacatagtctttaattttatt 28497458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 39721619 - 39721530
Alignment:
Q  126 gaagttgatggcttattttgttcaaattaacgattgttagggttataaatagacatgagctaataaaacttgcccaaataaaactactaa 215  Q
    ||||||| || || ||||| ||| ||||||| ||||||||||||| ||||  || ||| ||||||||| | |||||||||||||||||||    
T  39721619 gaagttggtgactcattttattccaattaacaattgttagggttacaaatgaacttgaactaataaaaatagcccaaataaaactactaa 39721530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 16492219 - 16492143
Alignment:
Q  100 atgtctataaaaatgaaatttttgaagaagttgatggcttattttgttcaaattaacgattgttagggttataaata 176  Q
    |||||||||| |||||||| || || ||| |||| || ||||||||| ||||||| | ||||||| |||||||||||    
T  16492219 atgtctataagaatgaaatattagaggaaattgacggtttattttgtccaaattagcaattgttaaggttataaata 16492143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University