View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20197_high_43 (Length: 250)
Name: NF20197_high_43
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33620134 - 33619899
Alignment:
| Q |
1 |
tatctgaattttaaatattttaccgattcggtatatagacagttgaatttttatatccgatgaattannnnnnnnaggatttataaaagaggatagttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33620134 |
tatctgaattttaaatattttaccgatacggtatatatacagttgaatttttatatacgatgaattattttttttaggatttataaaagaggatagttga |
33620035 |
T |
|
| Q |
101 |
aaaactttatatacatgagttgtttggcaagacccatcaattagtttatagcttataagtttacatgattgaaaaatttgtttaacaactaacatttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33620034 |
aaaactttatatacatgagttgtttggcaagacccatcaattagtttatagcttataagtttacatgattgaaaaatttgtttaacaactaacatttcat |
33619935 |
T |
|
| Q |
201 |
cgcgaacttattttattttattagcttataacttat |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33619934 |
cgcgaacttattttattttactagcttataacttat |
33619899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University