View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_high_45 (Length: 239)

Name: NF20197_high_45
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_high_45
NF20197_high_45
[»] chr2 (7 HSPs)
chr2 (54-151)||(11689907-11690004)
chr2 (138-200)||(11690023-11690085)
chr2 (138-200)||(11720978-11721040)
chr2 (54-151)||(11721059-11721151)
chr2 (54-187)||(11730133-11730265)
chr2 (128-179)||(11687254-11687305)
chr2 (128-179)||(11672778-11672829)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 11689907 - 11690004
Alignment:
Q  54 attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattcttattaccatttcataagatgaccatttc 151  Q
    ||||| |||| ||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  11689907 attaaacaattaagattatttagtgaaggactagccggatggcagcacataactttagcttattgattcttattaccatttcacaagatgaccatttc 11690004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 11690023 - 11690085
Alignment:
Q  138 aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggcttgcaaccaaca 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11690023 aagatgatcatttcatttttaagttaggacggcatatttgtgattgtgggcatgcaaccaaca 11690085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 11721040 - 11720978
Alignment:
Q  138 aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggcttgcaaccaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11721040 aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggaatgcaaccaaca 11720978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 11721151 - 11721059
Alignment:
Q  54 attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattcttattaccatttcataagatgaccatttc 151  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||| ||||      |||||||||||||||||||||||| ||||||||||||||    
T  11721151 attaatcaattaagattatttagtgaaggactagccggatggcagcacgtaaa-----gttattgattcttattaccatttcacaagatgaccatttc 11721059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 11730265 - 11730133
Alignment:
Q  54 attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattctta---ttaccatttcataagatgaccattt 150  Q
    |||||||||| |||||||||||||||     |||||||||| ||| |||| | |||| | |||| |||||||   | |||||||||||||||||||||||    
T  11730265 attaatcaattaagattatttagtgac----tagccgaatgacagtacatcacattaacatattaattcttacagtcaccatttcataagatgaccattt 11730170  T
Q  151 catttttaagttaggacggcatatttgtgattgtggg 187  Q
    |||||||  |||||||||||||||||||| |||||||    
T  11730169 catttttttgttaggacggcatatttgtgcttgtggg 11730133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 11687254 - 11687305
Alignment:
Q  128 accatttcataagatgaccatttcatttttaagttaggacggcatatttgtg 179  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  11687254 accatttcataagatgaccatttcatttttttgttaggacggcatatttgtg 11687305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 11672829 - 11672778
Alignment:
Q  128 accatttcataagatgaccatttcatttttaagttaggacggcatatttgtg 179  Q
    ||||||||| ||||||||||||||| |||| | |||||||||||||||||||    
T  11672829 accatttcaaaagatgaccatttcagttttcacttaggacggcatatttgtg 11672778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University