View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20197_high_50 (Length: 232)
Name: NF20197_high_50
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 35210669 - 35210871
Alignment:
| Q |
18 |
taaaccagtcaaacaacttgaggcaaaattagaatcaaatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaactgttctatgtcga |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35210669 |
taaaccagtcaaacaactcgaggcaaaattagaatcaaatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaattgttctatgtcga |
35210768 |
T |
|
| Q |
118 |
aaacactaaatattagacatattattaattacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggcctttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35210769 |
aaacactaaatattagacatattattaattacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggccttgg |
35210868 |
T |
|
| Q |
218 |
ctt |
220 |
Q |
| |
|
||| |
|
|
| T |
35210869 |
ctt |
35210871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 43998505 - 43998564
Alignment:
| Q |
147 |
tacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagc |
206 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
43998505 |
tacctgaggaccttgctctacacccttcttaaatggatcaccaacaacacgtctcaaagc |
43998564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University