View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_high_62 (Length: 203)

Name: NF20197_high_62
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_high_62
NF20197_high_62
[»] chr8 (9 HSPs)
chr8 (20-190)||(2846547-2846717)
chr8 (20-190)||(3161496-3161670)
chr8 (20-64)||(2841860-2841904)
chr8 (28-115)||(12851207-12851296)
chr8 (30-115)||(14949899-14949984)
chr8 (38-114)||(2487961-2488037)
chr8 (36-84)||(40728400-40728448)
chr8 (54-116)||(16162817-16162879)
chr8 (126-170)||(2832749-2832793)
[»] chr7 (7 HSPs)
chr7 (35-103)||(25670550-25670618)
chr7 (29-86)||(19719038-19719095)
chr7 (27-84)||(44808188-44808245)
chr7 (35-114)||(30535601-30535680)
chr7 (30-89)||(30553375-30553434)
chr7 (36-114)||(22387849-22387927)
chr7 (35-115)||(36537946-36538026)
[»] chr2 (4 HSPs)
chr2 (31-115)||(5902501-5902585)
chr2 (29-84)||(40279299-40279355)
chr2 (29-84)||(40279369-40279425)
chr2 (36-84)||(43065433-43065481)
[»] chr1 (14 HSPs)
chr1 (28-115)||(37593636-37593723)
chr1 (28-115)||(31517692-31517779)
chr1 (36-116)||(17420242-17420322)
chr1 (54-113)||(14737680-14737739)
chr1 (36-86)||(28287522-28287573)
chr1 (29-64)||(30815656-30815691)
chr1 (28-86)||(10199389-10199447)
chr1 (36-114)||(33723335-33723413)
chr1 (28-85)||(4699597-4699654)
chr1 (29-86)||(10744333-10744390)
chr1 (36-89)||(11211157-11211210)
chr1 (35-103)||(11941300-11941369)
chr1 (34-86)||(38578565-38578617)
chr1 (28-84)||(43722311-43722367)
[»] chr6 (6 HSPs)
chr6 (32-103)||(9202954-9203025)
chr6 (28-84)||(31420976-31421032)
chr6 (28-84)||(9027609-9027665)
chr6 (28-84)||(28641732-28641788)
chr6 (34-114)||(33737607-33737687)
chr6 (36-116)||(34403894-34403974)
[»] chr3 (8 HSPs)
chr3 (29-86)||(47132026-47132083)
chr3 (36-99)||(32711464-32711527)
chr3 (54-116)||(44014749-44014811)
chr3 (29-86)||(36887536-36887593)
chr3 (38-86)||(30573895-30573943)
chr3 (28-64)||(40665460-40665496)
chr3 (36-64)||(45555015-45555043)
chr3 (47-115)||(50015936-50016004)
[»] chr4 (3 HSPs)
chr4 (36-116)||(37575887-37575967)
chr4 (36-112)||(1137751-1137827)
chr4 (36-88)||(30631995-30632047)
[»] chr5 (2 HSPs)
chr5 (28-82)||(17258868-17258922)
chr5 (35-102)||(7808543-7808611)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2846547 - 2846717
Alignment:
Q  20 cttcaatggcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgctcaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  2846547 cttcaatggcttataaaaataagctgaaaacattttatgaacatgctataagttattttcctaaattttcgaaaacagtctcacgagtgtttatgctcaa 2846646  T
Q  120 tccaaacagcggaatatcaagtcacgcttgataattagggatctcgagaaacaccttttatgttctgtgct 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2846647 tccaaacagcggaatatcaagtcacgcttgataattagggatctcgagaaacaccttttatgttctgtgct 2846717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 3161670 - 3161496
Alignment:
Q  20 cttcaatggcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgctcaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3161670 cttcaatggcttataaaaataagctgaaaacattttatgaacatgtcataagttattttcataagttttcgaaaacagtctcacgagtgtttatgctcaa 3161571  T
Q  120 tccaaacagcggaata----tcaagtcacgcttgataattagggatctcgagaaacaccttttatgttctgtgct 190  Q
    ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3161570 tccaaacagcggaatatcaatcaagtcacgcttgataattagggatctcgagaaacaccttttatgttctgtgct 3161496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2841860 - 2841904
Alignment:
Q  20 cttcaatggcttataaaaataagctgaaaacattttatgaacatg 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2841860 cttcaatggcttataaaaataagctgaaaacattttatgaacatg 2841904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 12851207 - 12851296
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtc--tcacgagtgtttatgc 115  Q
    |||||| ||||||||| |||||||| ||||||||||| |||||| | |||||||||||||||  ||||||||  |||| |||||||||||    
T  12851207 gcttatgaaaataagccgaaaacatcttatgaacatgttataagctgttttcataagttttcccaaacagtctatcacaagtgtttatgc 12851296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 14949899 - 14949984
Alignment:
Q  30 ttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgc 115  Q
    ||||| ||||||||||||||||  ||||| |||||  |||||||||||||||||| | ||  |||||||||||| | |||||||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatgc 14949984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 2488037 - 2487961
Alignment:
Q  38 ataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatg 114  Q
    ||||||| |||||| ||| |||||||| |||||||| |||||||||||| ||  |||||||||||| |||| |||||    
T  2488037 ataagctaaaaacagtttttgaacatgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatg 2487961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 40728448 - 40728400
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataag 84  Q
    |||||| ||||||| || |||||||||||||||||||| ||||||||||    
T  40728448 aaataaactgaaaatatcttatgaacatgctataagttgttttcataag 40728400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 16162817 - 16162879
Alignment:
Q  54 ttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgct 116  Q
    ||||||||| |  ||||| | |||||||||||||||  |||||||||||| ||||||||||||    
T  16162817 ttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgct 16162879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2832793 - 2832749
Alignment:
Q  126 cagcggaatatcaagtcacgcttgataattagggatctcgagaaa 170  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||    
T  2832793 cagcggaatattaagtcgcgcttgatacttagggatcttgagaaa 2832749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 25670618 - 25670550
Alignment:
Q  35 aaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcac 103  Q
    ||||||||||||||||| ||||| ||||||  ||||||| |||||||||||||||  ||||||||||||    
T  25670618 aaaataagctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcac 25670550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 19719038 - 19719095
Alignment:
Q  29 cttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagtt 86  Q
    |||||||| |||||||||||||| ||||||||||||  ||||||| ||||||||||||    
T  19719038 cttataaagataagctgaaaacagtttatgaacatgtcataagttgttttcataagtt 19719095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 44808188 - 44808245
Alignment:
Q  27 ggcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataag 84  Q
    ||||||| |||||||||||||||||  ||||| |||||  ||||||||||||||||||    
T  44808188 ggcttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataag 44808245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 30535601 - 30535680
Alignment:
Q  35 aaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatg 114  Q
    ||||||| |||||||||  ||| ||||||   ||||||| |||||||||||| || ||||||||||| | ||||||||||    
T  30535601 aaaataacctgaaaacagcttacgaacatatcataagttgttttcataagttctccaaaacagtctctcaagtgtttatg 30535680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 30553375 - 30553434
Alignment:
Q  30 ttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttc 89  Q
    |||| |||||||| ||||||||  |||||||||||| ||||||| ||||| |||||||||    
T  30553375 ttatgaaaataaggtgaaaacagcttatgaacatgccataagtttttttcttaagttttc 30553434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 22387927 - 22387849
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatg 114  Q
    ||||||| | |||||| ||||| ||||||| ||||||| |||||||||| | ||  ||||||||||||  |||||||||    
T  22387927 aaataagttaaaaacagtttataaacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatg 22387849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 36537946 - 36538026
Alignment:
Q  35 aaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgc 115  Q
    |||| ||||| ||||||  |||||||||||  ||||||| ||| |||||||| ||  ||||| |||||| |||||||||||    
T  36537946 aaaaaaagctaaaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatgc 36538026  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 5902585 - 5902501
Alignment:
Q  31 tataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgc 115  Q
    |||||||| |||||||||||| ||||||||||||  ||||| | |||||||||||| |   |||||||||||| |||||||||||    
T  5902585 tataaaaacaagctgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatgc 5902501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 40279299 - 40279355
Alignment:
Q  29 cttataaaaataagctgaaaacattttatgaac-atgctataagttattttcataag 84  Q
    ||||| ||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||    
T  40279299 cttatgaaaattagctgaaaacagtttatgaacaatgccataagttgttttcataag 40279355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 40279369 - 40279425
Alignment:
Q  29 cttataaaaataagctgaaaacattttatgaac-atgctataagttattttcataag 84  Q
    ||||| ||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||    
T  40279369 cttatgaaaattagctgaaaacagtttatgaacaatgccataagttgttttcataag 40279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 43065481 - 43065433
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataag 84  Q
    |||||||||||||||| |||||| |||||  ||||||| ||||||||||    
T  43065481 aaataagctgaaaacaatttatggacatgtcataagttgttttcataag 43065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 37593723 - 37593636
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgc 115  Q
    |||||| |||||||||||||||||  |||||||||||  ||||||| | ||||| |||||||  ||||||||| || |||||||||||    
T  37593723 gcttatgaaaataagctgaaaacagcttatgaacatgtcataagttgtgttcattagttttcccaaacagtctaacaagtgtttatgc 37593636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 31517779 - 31517692
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgc 115  Q
    |||||| |||||||||||||||||  |||||||||||  || |||| |||| ||||||| ||  |||||||||||| |||| ||||||    
T  31517779 gcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgc 31517692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 17420242 - 17420322
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgct 116  Q
    ||||||| |||||||| |||||| |||||  ||||||| |||||||||| | |  |||||||||| || ||||||||||||    
T  17420242 aaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttatgct 17420322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 14737739 - 14737680
Alignment:
Q  54 ttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttat 113  Q
    ||||| ||||| ||||||||||||||| ||||||||  |||||||||||| |||| ||||    
T  14737739 ttatggacatgttataagttattttcacaagttttcccaaacagtctcacaagtgcttat 14737680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 28287573 - 28287522
Alignment:
Q  36 aaataagctgaaaacatt-ttatgaacatgctataagttattttcataagtt 86  Q
    |||||||||||||||||| ||||||||||| ||||| || ||||||||||||    
T  28287573 aaataagctgaaaacattcttatgaacatgttataaattgttttcataagtt 28287522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 30815691 - 30815656
Alignment:
Q  29 cttataaaaataagctgaaaacattttatgaacatg 64  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30815691 cttatgaaaataagctgaaaacattttatgaacatg 30815656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 10199447 - 10199389
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagtt 86  Q
    |||||| |||||||||||||||||  |||||||||||  ||||| ||||||||| ||||    
T  10199447 gcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagtt 10199389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 33723413 - 33723335
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatg 114  Q
    ||||||||||||||||| | |||||||||  || || | ||| |||||||||||  || ||||||||| ||||||||||    
T  33723413 aaataagctgaaaacatctcatgaacatgtcatgagctgtttccataagttttcccaagcagtctcacaagtgtttatg 33723335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 4699654 - 4699597
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagt 85  Q
    ||||||| ||||||||| ||||||  |||||||||||  ||||||| |||||||||||    
T  4699654 gcttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataagt 4699597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 10744333 - 10744390
Alignment:
Q  29 cttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagtt 86  Q
    |||||||||||||| ||||||||  |||||||||||| ||||| | |||||| |||||    
T  10744333 cttataaaaataagatgaaaacagcttatgaacatgccataagctgttttcacaagtt 10744390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 11211157 - 11211210
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttc 89  Q
    ||||||| | ||||||  ||||| |||||||||||||||||||||||| |||||    
T  11211157 aaataagttaaaaacaacttatggacatgctataagttattttcataaattttc 11211210  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 11941300 - 11941369
Alignment:
Q  35 aaaataagctgaaaacattttatgaac-atgctataagttattttcataagttttcgaaaacagtctcac 103  Q
    |||||||||||||||||  |||||||| ||| |||||| |||||||||||| | ||  ||||||||||||    
T  11941300 aaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctcccaaacagtctcac 11941369  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 38578565 - 38578617
Alignment:
Q  34 aaaaataagctgaaaacattttatgaacatgctataagttattttcataagtt 86  Q
    ||||||||||| ||||||  ||||||| ||| |||||||| ||||||||||||    
T  38578565 aaaaataagctcaaaacaacttatgaatatgttataagttgttttcataagtt 38578617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 43722367 - 43722311
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataag 84  Q
    ||||||||||||||||||||||||   || |||||||  ||||||| ||||||||||    
T  43722367 gcttataaaaataagctgaaaacaacataagaacatgtcataagtttttttcataag 43722311  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 9203025 - 9202954
Alignment:
Q  32 ataaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcac 103  Q
    |||||||||| || ||| || ||||||||||||| || ||||||||||||||||| ||  ||||||||||||    
T  9203025 ataaaaataaactaaaatcagtttatgaacatgccatgagttattttcataagttctctcaaacagtctcac 9202954  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 31420976 - 31421032
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataag 84  Q
    |||||| |||||||||||||||||  ||||||| |||| ||||||| ||||||||||    
T  31420976 gcttatgaaaataagctgaaaacaacttatgaatatgcgataagttgttttcataag 31421032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 9027609 - 9027665
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataag 84  Q
    |||||| |||||||||||||||||  ||||| |||||  ||||||||||| ||||||    
T  9027609 gcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataag 9027665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 28641788 - 28641732
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcataag 84  Q
    |||||| |||||||||| ||||||  ||||||||||| |||||| | ||||||||||    
T  28641788 gcttatgaaaataagctaaaaacagcttatgaacatgttataagctgttttcataag 28641732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 33737607 - 33737687
Alignment:
Q  34 aaaaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatg 114  Q
    |||||| ||| |||||||  |||||||||||| ||||||| | |||||||||| ||  |||||||  ||| ||||||||||    
T  33737607 aaaaatgagccgaaaacagcttatgaacatgccataagttgtgttcataagttctctcaaacagttgcacaagtgtttatg 33737687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 34403894 - 34403974
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgct 116  Q
    ||||||| ||||||||  |||||||||||  ||||||| ||||| ||| || ||  ||||||||| || ||||||||||||    
T  34403894 aaataaggtgaaaacaccttatgaacatgtcataagttgttttcttaacttctcctaaacagtctaacaagtgtttatgct 34403974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 47132026 - 47132083
Alignment:
Q  29 cttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagtt 86  Q
    ||||||||||||||||||||||| |||||| | |||  ||||||| ||||||||||||    
T  47132026 cttataaaaataagctgaaaacagtttatggatatgacataagttgttttcataagtt 47132083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 32711464 - 32711527
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtc 99  Q
    ||||||||||||||||   ||| ||||||||||||| |||||||||||||| ||  ||||||||    
T  32711464 aaataagctgaaaacaacctataaacatgctataagctattttcataagttctctcaaacagtc 32711527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 44014811 - 44014749
Alignment:
Q  54 ttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgct 116  Q
    ||||||||| |  ||||| | |||||||||||||||  |||||||||||| ||||||||||||    
T  44014811 ttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgct 44014749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 36887536 - 36887593
Alignment:
Q  29 cttataaaaataagctgaaaacattttatgaacatgctataagttattttcataagtt 86  Q
    ||||| |||||||||||||||||| |||||||||||  | ||||| |||| |||||||    
T  36887536 cttatgaaaataagctgaaaacatcttatgaacatgtcaaaagttcttttgataagtt 36887593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 30573943 - 30573895
Alignment:
Q  38 ataagctgaaaacattttatgaacatgctataagttattttcataagtt 86  Q
    ||||||||||||||  |||||||||||| |||| || ||||||||||||    
T  30573943 ataagctgaaaacagcttatgaacatgccataatttgttttcataagtt 30573895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 40665460 - 40665496
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatg 64  Q
    ||||||||||||||||||||||||  |||||||||||    
T  40665460 gcttataaaaataagctgaaaacagcttatgaacatg 40665496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 45555015 - 45555043
Alignment:
Q  36 aaataagctgaaaacattttatgaacatg 64  Q
    |||||||||||||||||||||||||||||    
T  45555015 aaataagctgaaaacattttatgaacatg 45555043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 50015936 - 50016004
Alignment:
Q  47 aaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgc 115  Q
    |||||| |||| ||||||  ||| ||| |||||||||||| ||  |||||||||||| |||||||||||    
T  50015936 aaacatcttataaacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatgc 50016004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 37575967 - 37575887
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgtttatgct 116  Q
    |||| |||||||||||  ||||||  ||| ||||||||||||||||||||| ||  ||||| | ||||||| |||||||||    
T  37575967 aaatgagctgaaaacaacttatgagtatgttataagttattttcataagttctctcaaacaatgtcacgagagtttatgct 37575887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 1137751 - 1137827
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagttttcgaaaacagtctcacgagtgttta 112  Q
    |||||| |||||||||  |||||||||||  ||||| | |||||||||||| ||  ||||||| |||| ||||||||    
T  1137751 aaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagtgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 30631995 - 30632047
Alignment:
Q  36 aaataagctgaaaacattttatgaacatgctataagttattttcataagtttt 88  Q
    ||||||||| ||||||  |||||||||||| ||||||| |||| |||||||||    
T  30631995 aaataagcttaaaacagcttatgaacatgccataagttgtttttataagtttt 30632047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 17258922 - 17258868
Alignment:
Q  28 gcttataaaaataagctgaaaacattttatgaacatgctataagttattttcata 82  Q
    |||||| |||||||||||||||||  |||||||||||  ||||| ||||||||||    
T  17258922 gcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcata 17258868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 7808543 - 7808611
Alignment:
Q  35 aaaataagctgaaaacattttatgaac-atgctataagttattttcataagttttcgaaaacagtctca 102  Q
    |||||||||||||||||  |||||||| ||| |||||| |||||||||||| | ||  |||||||||||    
T  7808543 aaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctcccaaacagtctca 7808611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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