View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_8 (Length: 430)
Name: NF20197_high_8
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 22716973 - 22716749
Alignment:
| Q |
7 |
agtgagaagaaattagtgtcaaaatgtaagaaagatgcaaataaaaagtttagttcaagattcaaaaggcctccaaagacatcagatataaacattcgtt |
106 |
Q |
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| T |
22716973 |
agtgacaagaaattagtgtcaaaatgtaagaaagatgccaatgaaaagtttagttcaagattcaaaaggcttccaaagacatcagatataaacattagtt |
22716874 |
T |
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| Q |
107 |
caacatcaaattctagagcaaacgacatcagaagtaatacaaaaagcaagagaatttcaaatgtcctctctattgggacagagtcttctcatctggctaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22716873 |
caacatcaaattctagagcaaacgacatcagaagtaatacaaaaagcaagagaatttcaaatgtcctctctattgggacagagtcttcttatctggctaa |
22716774 |
T |
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| Q |
207 |
caaaattcctctcaaacaggtacta |
231 |
Q |
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||||||||||||||||||||||||| |
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| T |
22716773 |
caaaattcctctcaaacaggtacta |
22716749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 412
Target Start/End: Complemental strand, 22716691 - 22716563
Alignment:
| Q |
289 |
gaaagtcacattactctaataccctcatcttcatatgtaatttatttttctattgtgtattttag------aattaaaatacacattttactatgatatt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22716691 |
gaaagtcacattactctaataccctcatcttcatatgtaatttatttttctattgtgtattttagaaaaataattaaaatacacattttactatgatatt |
22716592 |
T |
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| Q |
383 |
gnnnnnnncaagcattcacaccatccttaa |
412 |
Q |
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| T |
22716591 |
g-aaaaaacaagcattcacaccatccttaa |
22716563 |
T |
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