View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_high_9 (Length: 414)
Name: NF20197_high_9
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_high_9 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10448814 - 10448577
Alignment:
| Q |
1 |
ctatagtttcacgatcaagggaagctcagatcaatacttattttgattcatacgagtcagctgtcataccttaaaaattgcaattgtccgctactcattt |
100 |
Q |
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| T |
10448814 |
ctatagtttcacgatcaagggaagctcagatcaatacttattttgattcatacgagtcagctgtcataccttaaaaattgcaattgtccgctactcattt |
10448715 |
T |
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| Q |
101 |
ataacagcacgaaaaaacaagggtcaggaaaattagagtggcatcatagttaagttcctatactcgtcataaagaaacttcttcgcaaaatcaacagaaa |
200 |
Q |
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| T |
10448714 |
ataacagcacgaaaaaacaagggtcgggaaaattagagtggcatcatagttaagttcctatactcgtcataaagaaacttcttcgcaaaatcaacagaaa |
10448615 |
T |
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| Q |
201 |
gcaaacattaccttttaatgcattatgcatgaatattg |
238 |
Q |
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| T |
10448614 |
gcaaacattaccttttaatgcattatgcatgaatattg |
10448577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 246 - 406
Target Start/End: Complemental strand, 10448549 - 10448389
Alignment:
| Q |
246 |
gttagtagaccatatgaaatatgtaacattgtccttttggtttacattaagttcgattctacaattaacagtcgtgatagttcctaaacaaagaatcaga |
345 |
Q |
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| T |
10448549 |
gttagtagaccatatgaaatatgtaacattgtccttttggtttacattaagtttgattctacaattaacagtcgtgatagttcctaaacaaagaatcaga |
10448450 |
T |
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| Q |
346 |
gacataatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttc |
406 |
Q |
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| T |
10448449 |
gacataatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttc |
10448389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 13148 - 13207
Alignment:
| Q |
26 |
tcagatcaatacttattttgattcatacgagtcagctgtcataccttaaaaattgcaatt |
85 |
Q |
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| T |
13148 |
tcagatcaatacttattttgattcatataagtccgctatcaaaccttaaacattgcaatt |
13207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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