View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_10 (Length: 413)
Name: NF20197_low_10
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 9908012 - 9907634
Alignment:
| Q |
17 |
cagacatgattaatctaaaatataacaatacttgcgaacttccaaagtgataagtatagcaaataatgcaatctcaatcatatttcatcataatccattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9908012 |
cagacatgattaatctaaaatataacaatacttgcgaacttccaaagtgataagtatagcaaataatgcaatctcaatcatatttcatcataatccattg |
9907913 |
T |
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| Q |
117 |
gaattgtactacttattagggctaactctctcatttaagtatcttattttctattcctcttcttactcctcttcactctcctactttggagataatcttc |
216 |
Q |
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| T |
9907912 |
gaattgtactacttattagggctaactctctcatttaagtatcttattttctattcctcttcttactcctcttcactctcctactttggagataatcttc |
9907813 |
T |
|
| Q |
217 |
ttatttgattatcttgtgctttagtcctttattttctcctaaaacttaattttatactaaattccactattttatttccttctatgaagttagaactaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9907812 |
ttatttgattatcttgtgctttagtcctttattttctcctaaaacttaattttatactaaattccactattttatttccttctatgaagttagaactaaa |
9907713 |
T |
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| Q |
317 |
tcttttgttcaattttattcctcgaagtggatccattttttctttatcttaatccttccgctataaaacacaattattt |
395 |
Q |
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| T |
9907712 |
tcttttgttcaattttattcctcgaagtggatccattttttctttatcttaatccttccgctataaaacacagttattt |
9907634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 24116940 - 24116891
Alignment:
| Q |
287 |
tttatttccttctatgaagttagaactaaatcttttgttcaattttattc |
336 |
Q |
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|||| ||||| |||||||||||||||||| |||| || |||||||||||| |
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| T |
24116940 |
tttacttcctcctatgaagttagaactaagtcttctgctcaattttattc |
24116891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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