View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20197_low_11 (Length: 406)
Name: NF20197_low_11
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_11 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Original strand, 27982408 - 27982789
Alignment:
| Q |
9 |
ataattctttacatatttcttctaggcatataatcctttaaaatgcaaactacgtatataaagatgtgagtctcatgaatcaccgtataccattaagagt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27982408 |
ataattctttacatatttcttctaggcatataatcctttaaaatgcaaactacgtatataaagatgtgattctcatgaatcaccgtataccattaagagt |
27982507 |
T |
|
| Q |
109 |
atttcattggtaatttatacctaaaactccaaatcaagacttgtatactctctcaaaagaaaaacagaatcaatgtcatttagaattagatgatgtgact |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27982508 |
atttcattggtaatttatacctaaaactccaaatcaagacttgtatactctctcgatagaaaaacaaaatcaatgtcatttagaattagatgatgtgact |
27982607 |
T |
|
| Q |
209 |
ttatggctgatgatataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaatcaccacatcacaccattaattaagtgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27982608 |
ttatggctgatgatataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaatcaccacatcacaccattaattaagtgt |
27982707 |
T |
|
| Q |
309 |
atttcgttgttgggaagtatctcatttgtgagatagtctttgagtgttccttcacctgcatcagatggagcatatatcttag |
390 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27982708 |
atttcgttgttgggaagtatctcatctgtgagatagtctttgagtgttccttcacctgcatcagatgtagcatatatcttag |
27982789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 2658261 - 2658318
Alignment:
| Q |
223 |
ataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||| |
|
|
| T |
2658261 |
ataaaataactgaaaacaaatcaaataccctcttccacctggaggatcaagtaatgaa |
2658318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 2637277 - 2637211
Alignment:
| Q |
213 |
ggctgatgatataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaa |
280 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| ||| | ||||| ||||||||||| |
|
|
| T |
2637277 |
ggctgatgatacaaaataactgaaaacaaatcaaataccctttt-cacttggaggatcaagtaatgaa |
2637211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 2637383 - 2637348
Alignment:
| Q |
21 |
atatttcttctaggcatataatcctttaaaatgcaa |
56 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2637383 |
atatttcttctaggcatataatactttaaaatgcaa |
2637348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 35949 - 35880
Alignment:
| Q |
212 |
tggctgatgatataaaataactgaaaacaaatcaaata-ccattttccacctagaggagcaagtaatgaa |
280 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||||| || |||||||||| |||| ||||||||||| |
|
|
| T |
35949 |
tggctgatgatacaaactaactgaaagcaaatcaaataccccttttccacctggaggttcaagtaatgaa |
35880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University