View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_12 (Length: 393)
Name: NF20197_low_12
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 8530130 - 8529754
Alignment:
| Q |
18 |
cttttcgattgaattggctactgctataaatgacagatggactaatagaaaccctatagttccttacttgctg------------ctttctgttgatttt |
105 |
Q |
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| T |
8530130 |
cttttcgattgaattggctactgctaaaaatgacagatggactaatagaaaccctatagttccttacttgctgagcatgctaaagctttctgttgatttt |
8530031 |
T |
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| Q |
106 |
agttagttattatatgagtaagttgtaaccagttaaagatcacattctttatattattagactttagagtaatcataaaaactgcttgatgattgatgac |
205 |
Q |
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| T |
8530030 |
agttagttattatatgagtaagctgtaatcagttaaagatcacattctttatattattagactttagagtaatcataaaaactgcttgatgattgatgac |
8529931 |
T |
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| Q |
206 |
aaagcaaaagacaatgtattcataaaattaatgatttacatattgttgatttattatatagttttgaaatactattttgtgtaacatgaactagaaggat |
305 |
Q |
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| T |
8529930 |
aaagcaaaagacaatgtattcataaaattaatgatttacatattgttgatttattatatagttttgacatactattttgtgtaacatgaactagaaggat |
8529831 |
T |
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| Q |
306 |
ctcataactatgaggtttaattacttgtttgtacaaaatttgaaaataaacaatgtatattctgacgtgcgtttctt |
382 |
Q |
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| T |
8529830 |
ctcataactatgaggtttaattacttgtttgtgcaaaatttgaaaataaacaatgtatattctgacgtgcgtttctt |
8529754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 162 - 370
Target Start/End: Complemental strand, 8537877 - 8537671
Alignment:
| Q |
162 |
ttagactttagagtaatcataaaa-actgcttgatgattgatgacaaagcaaaagacaatgtattcataaaattaatgatttacatattgttgatttatt |
260 |
Q |
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| T |
8537877 |
ttagactttatagtattcataaaatactaattgatgattgatgataaagcaaaagacaatgtattcataaagttaatgatctacatattgttgagttatt |
8537778 |
T |
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| Q |
261 |
atatagttttgaaatactattttgtgtaacatgaactagaaggatctcataactatgaggtttaattacttgtttgtacaaaatttgaaaataaacaatg |
360 |
Q |
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| T |
8537777 |
ataga--tttgaca-actattttgtgtaaattgaactagaaggatatcataattatgaggtttaattaattgtttgtgcaaaatttgaaaataaacaatg |
8537681 |
T |
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| Q |
361 |
tatattctga |
370 |
Q |
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| T |
8537680 |
tttactctga |
8537671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 8516688 - 8516456
Alignment:
| Q |
24 |
gattgaattggctactgctataaatgacagatggactaatagaaaccctatagttccttact-----tgct---gctttctgttgattttagttagttat |
115 |
Q |
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| T |
8516688 |
gattgaattggctactgatataaatgatagatagactaatagaaaccctatagttacttactgagcatgctaaagctttctgttgattttagttagttat |
8516589 |
T |
|
| Q |
116 |
tatatgagtaagttgtaaccagttaaagatcacattctttatattattagactttagagtaatcataaaaactgcttgatgattgatgacaaagcaaaag |
215 |
Q |
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| T |
8516588 |
---atgtgtaatctgtaaccagttaaagatccctttctttatact-ttagactttag--tattcataaaatacgcttgatgattgatgacaaagcaaaag |
8516495 |
T |
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| Q |
216 |
acaatgtattcataaaattaatgatttacatattgttga |
254 |
Q |
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| T |
8516494 |
acaatgtataaataaagttaatgatttacatattgttga |
8516456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 19868894 - 19868990
Alignment:
| Q |
118 |
tatgagtaagttgtaaccagttaaagatcacattctttatattattagactttagagtaatcataaaa-actgcttgatgattgatgacaaagcaaaa |
214 |
Q |
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| T |
19868894 |
tatgtgtaagctgtaaccagttaaagatccctttttttatact-ttagactttagagtattcataaaataccgcttgatgattgataccaaagcaaaa |
19868990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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