View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_14 (Length: 388)
Name: NF20197_low_14
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 142 - 363
Target Start/End: Complemental strand, 28717097 - 28716876
Alignment:
| Q |
142 |
tacaaatatagatgaacatagtgagaaaacagcctcgaagaaatgataagctacgcataaatttggataaaataaatggaaacttcaaataaatttgtct |
241 |
Q |
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| T |
28717097 |
tacagatatagatgaacatagtaagaaaacagcctcgaagaaatgataagctacccataaatttggataaaataaatggaaacttcaaataaatttgtct |
28716998 |
T |
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| Q |
242 |
tatttcttcaatgatataattcagtgctttgcattcttttcctccggtaatataatcaaccagccacaccattgccaacagtaatttctgcatttaagat |
341 |
Q |
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| T |
28716997 |
tatttcttccatgatataattcagtgctttgcattcttttcctccggtaatataatcaaccagccacaccattgccaacagtaatttctgcatttaagct |
28716898 |
T |
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| Q |
342 |
gctttttacctttgggggacct |
363 |
Q |
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| T |
28716897 |
gctttttacctttgggggacct |
28716876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 24 - 356
Target Start/End: Complemental strand, 28711175 - 28710818
Alignment:
| Q |
24 |
ataacagaataataacagtcccagatgggaatgcttccaaggatttctgagagctaacttgttcttctgtcataataccatcatgaaaaacatttgagag |
123 |
Q |
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| T |
28711175 |
ataacagaatgataacagttccaaatgggaatgctctcaaggatttctgacagctcacttgttcttctgtcacaataccatcatgaaccacatttgtgag |
28711076 |
T |
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| Q |
124 |
caaataaatacatgaaaatacaaatatagatgaacatagt-gagaaaacagcctcgaa-gaaatgataagctacgcataaatttgg--------ataaaa |
213 |
Q |
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| T |
28711075 |
taaataaatacatgaaaatacaaatatagatgaacatagtaaagaaaacagcctccaaggaaatgataagctacacataaatttggatgaataaataaaa |
28710976 |
T |
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| Q |
214 |
t---aaatggaaacttcaaataaatttgtcttatttcttcaatgatataattc------------agtgctttgcattcttttcctccggtaatataatc |
298 |
Q |
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| T |
28710975 |
taaaaaatggaaactgcaaacgaacttttcttatttcttccatgatataattccattactagtggagtgctttgcattcttttcctcaggttatataatc |
28710876 |
T |
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| Q |
299 |
aaccagccacaccattgccaacagtaatttctgcatttaagatgctttttacctttgg |
356 |
Q |
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| T |
28710875 |
aaacagccacgccgttgccaacagtaatttctgcatttaagctgctttctacctttgg |
28710818 |
T |
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