View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_15 (Length: 378)
Name: NF20197_low_15
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 180 - 350
Target Start/End: Original strand, 49876561 - 49876731
Alignment:
| Q |
180 |
gttcttctaaaaatgatgcaagtgcaagttcctgtgactcacaaaatcaaccatctcttcaatttccttcagaatcatccttcttcaatagctctcaatc |
279 |
Q |
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| T |
49876561 |
gttcttctaaaaatgatgcaagtgcaagttcctgtgactcacaaaatcaaccatctcttcaatttccttcagaatcatccttcttcaatagctctcaatc |
49876660 |
T |
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| Q |
280 |
tctgcaaatattccgctcttttcctcgctctactcgccacctttcgcaccatttttatcattaaattcccc |
350 |
Q |
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| T |
49876661 |
tctgcaaatattccgctcttttcctcgctctactcgccacctttcacaccattttcatcatcaaattcccc |
49876731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 49876378 - 49876479
Alignment:
| Q |
16 |
atatatagtttattatgttagttatcgctaactacataatccaacaaattgccagcaagtaagttaagttatcattctaaaaaacaagagtaagttaagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49876378 |
atatatagtttattatgttagttatcgctaactacataatccaacaaattgccagcaagtaagttaagttatcattctaaaaaacaagagtaagttaagt |
49876477 |
T |
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| Q |
116 |
ag |
117 |
Q |
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|| |
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| T |
49876478 |
ag |
49876479 |
T |
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