View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_low_18 (Length: 374)

Name: NF20197_low_18
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_low_18
NF20197_low_18
[»] chr6 (3 HSPs)
chr6 (15-359)||(1786656-1787002)
chr6 (249-314)||(18860049-18860114)
chr6 (255-314)||(16477086-16477145)
[»] chr4 (43 HSPs)
chr4 (243-314)||(12178908-12178979)
chr4 (243-314)||(12184292-12184363)
chr4 (243-314)||(12189627-12189698)
chr4 (243-314)||(12172438-12172509)
chr4 (243-314)||(12182388-12182459)
chr4 (243-314)||(12189283-12189354)
chr4 (245-314)||(12180473-12180542)
chr4 (245-314)||(12180811-12180880)
chr4 (245-314)||(12182047-12182116)
chr4 (251-314)||(12169474-12169537)
chr4 (243-314)||(12177328-12177399)
chr4 (243-309)||(12169151-12169217)
chr4 (243-314)||(12173104-12173175)
chr4 (243-314)||(12184954-12185025)
chr4 (243-314)||(12185298-12185369)
chr4 (243-314)||(12186603-12186674)
chr4 (243-314)||(12186946-12187017)
chr4 (243-314)||(12187290-12187361)
chr4 (243-314)||(12188597-12188668)
chr4 (245-311)||(12170057-12170123)
chr4 (252-314)||(12188949-12189011)
chr4 (245-314)||(12172765-12172834)
chr4 (245-314)||(12174115-12174184)
chr4 (245-314)||(12174781-12174850)
chr4 (245-314)||(12178567-12178636)
chr4 (245-314)||(12183950-12184019)
chr4 (245-314)||(12184614-12184683)
chr4 (243-314)||(12174454-12174525)
chr4 (245-314)||(12173774-12173843)
chr4 (245-314)||(12179234-12179303)
chr4 (253-314)||(12182722-12182783)
chr4 (245-313)||(12173433-12173501)
chr4 (245-314)||(12175124-12175192)
chr4 (243-314)||(12176985-12177058)
chr4 (261-311)||(12170661-12170711)
chr4 (262-311)||(12169779-12169828)
chr4 (256-314)||(4374979-4375037)
chr4 (261-311)||(12170367-12170417)
chr4 (243-280)||(12185641-12185678)
chr4 (243-280)||(12187633-12187670)
chr4 (247-280)||(17817947-17817980)
chr4 (243-276)||(19156126-19156159)
chr4 (243-315)||(12170987-12171059)
[»] chr5 (2 HSPs)
chr5 (255-314)||(21825765-21825824)
chr5 (254-313)||(25904730-25904789)
[»] chr2 (51 HSPs)
chr2 (255-314)||(24621693-24621752)
chr2 (255-314)||(24622012-24622071)
chr2 (255-314)||(24622331-24622390)
chr2 (255-314)||(24622615-24622674)
chr2 (255-314)||(24622899-24622958)
chr2 (255-314)||(24623502-24623561)
chr2 (255-314)||(24623821-24623880)
chr2 (255-314)||(24624414-24624473)
chr2 (255-314)||(24624733-24624792)
chr2 (255-314)||(24625017-24625076)
chr2 (255-314)||(24625336-24625395)
chr2 (255-314)||(24626909-24626968)
chr2 (255-314)||(24631395-24631454)
chr2 (255-314)||(24631714-24631773)
chr2 (255-314)||(24631998-24632057)
chr2 (255-314)||(24632282-24632341)
chr2 (255-314)||(24632601-24632660)
chr2 (255-314)||(24632885-24632944)
chr2 (255-314)||(24633169-24633228)
chr2 (255-314)||(24633488-24633547)
chr2 (255-314)||(24633807-24633866)
chr2 (255-314)||(24634091-24634150)
chr2 (255-314)||(24634694-24634753)
chr2 (255-314)||(24638773-24638832)
chr2 (255-314)||(24639092-24639151)
chr2 (255-314)||(24623218-24623277)
chr2 (255-314)||(24627228-24627287)
chr2 (255-314)||(24627512-24627571)
chr2 (255-314)||(24631111-24631170)
chr2 (255-314)||(24625978-24626037)
chr2 (255-314)||(24634410-24634469)
chr2 (255-314)||(24638454-24638513)
chr2 (255-308)||(24626298-24626351)
chr2 (255-314)||(3348060-3348119)
chr2 (255-308)||(24637837-24637890)
chr2 (255-314)||(24619612-24619674)
chr2 (255-314)||(24620760-24620822)
chr2 (255-314)||(24621082-24621145)
chr2 (255-314)||(24621405-24621468)
chr2 (255-314)||(24625655-24625718)
chr2 (255-314)||(24626621-24626684)
chr2 (255-314)||(24635565-24635628)
chr2 (255-314)||(24636266-24636329)
chr2 (255-314)||(24636589-24636652)
chr2 (255-314)||(24637514-24637577)
chr2 (255-314)||(24639441-24639504)
chr2 (255-314)||(24639764-24639827)
chr2 (255-314)||(24640087-24640150)
chr2 (255-314)||(24635242-24635305)
chr2 (255-314)||(24636912-24636975)
chr2 (249-314)||(32352347-32352412)
[»] scaffold1024 (1 HSPs)
scaffold1024 (255-314)||(53-112)
[»] chr3 (3 HSPs)
chr3 (255-314)||(14903158-14903217)
chr3 (263-314)||(16990093-16990144)
chr3 (259-308)||(30729418-30729467)
[»] chr1 (2 HSPs)
chr1 (259-313)||(2557895-2557949)
chr1 (257-292)||(12891610-12891645)
[»] chr7 (2 HSPs)
chr7 (244-296)||(42435297-42435349)
chr7 (256-299)||(19426010-19426053)
[»] chr8 (3 HSPs)
chr8 (251-282)||(38580338-38580369)
chr8 (243-307)||(13642504-13642566)
chr8 (257-314)||(24724671-24724728)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 1786656 - 1787002
Alignment:
Q  15 aaggtcaatctttattaacatcttaaacacattgagtataatgcttagaattgccataaagttgacagaattatatgatgacaccgtgattttgttaaaa 114  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1786656 aaggtcaatctttattaacatcttaaacaaattgagtacaatgcttagaattgccataaagttgacagaattatatgatgacaccttgattttgttaaaa 1786755  T
Q  115 atgtgataccgtaattttgtcaaattcactagtaatcgaaacatatat--taatttgcggttttggtacaacatgacatgtagattaataattgtggtaa 212  Q
     ||||||| || ||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||| |||||||| |||||||||||||||||||||    
T  1786756 ttgtgatatcgaaattttgtcaaattcactagtaatcgaaacatatatactaatttttggttttggtacgacatgacacgtagattaataattgtggtaa 1786855  T
Q  213 aagaagtcttgtgttagnnnnnnnggttacaaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgccca 312  Q
    ||| |||||||||||||       ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  1786856 aaggagtcttgtgttagtttttttggttacacaaagggtgggagaggtgcaacacaaagacttaccagaaggtcacccatcctaatactactctcgtcca 1786955  T
Q  313 agttagtttgaattaaaaatgtaaagacaatatattcggaaaatact 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1786956 agttagtttgaattaaaaatgtaaagacaatatattcggaaaatact 1787002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 18860114 - 18860049
Alignment:
Q  249 ggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  18860114 ggtgggagaggtgcaacacaaggactttccaggaggtcacccatcctagtactactctcgcccaag 18860049  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 16477086 - 16477145
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  16477086 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 16477145  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12178908 - 12178979
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12178908 aaaaatggtgggagaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12178979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12184292 - 12184363
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12184292 aaaaatggtgggagaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12184363  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12189627 - 12189698
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12189627 aaaaatggtgggagaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12189698  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12172438 - 12172509
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12172438 aaaaacggtgggagaggtgcaatacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12172509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12182388 - 12182459
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  12182388 aaaaatggtgggagaggtgcaacacaaggacttcccaggaggtcacccatcctagtcctactctcgcccaag 12182459  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12189283 - 12189354
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  12189283 aaaaatggtgggagaggtgcaacacaaggacttcccaggaggtcatccatcctagtactactctcgcccaag 12189354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12180473 - 12180542
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12180473 aaagggtgggagaggttaaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12180542  T

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Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12180811 - 12180880
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  12180811 aaagcgtgggagaggtgcaacacaaggactttccaggaggtcacccatcctagtactactctcgcccaag 12180880  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12182047 - 12182116
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12182047 aaagggtgggagaggttaaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12182116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 12169474 - 12169537
Alignment:
Q  251 tgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  12169474 tgggagaggtgcaacacaaggacttcccaaaaggtcacccatcctagaactactctcgcccaag 12169537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12177328 - 12177399
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||||||||    
T  12177328 aaaaatggtgggagaggtgcaatacaaggacttcccaggtggtcacccatcctagtactactctcgcccaag 12177399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 12169151 - 12169217
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgc 309  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  12169151 aaaaaaggtgggagaggtgcaatacaaggacttcccaggaggtcacccatcctagtactactctcgc 12169217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12173104 - 12173175
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| ||||||||| |||||| |||||||||||| || ||||||||||||||| |||||||||||||||||    
T  12173104 aaaaatggtgggagatgtgcaatacaaggacttcctaggaggtcacccatcctagtactactctcgcccaag 12173175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12184954 - 12185025
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||| |||||| |||||| ||| ||||||||||| |||||||||||||||||    
T  12184954 aaaaatggtgggagaggtgcaacaaaaggacctcccaggaggccacccatcctagtactactctcgcccaag 12185025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12185298 - 12185369
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| ||||||||||||||||||||||||||||| || ||| ||||||||||  |||||||||||||||||    
T  12185298 aaaaatggtgggagaggtgcaacacaaggacttcctaggaggacacccatccttgtactactctcgcccaag 12185369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12186603 - 12186674
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||    
T  12186603 aaaaatggtgggagaggtgcaacacaaggacttctcaggaggacacccatcctcgtactactctcgcccaag 12186674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12186946 - 12187017
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||| |||||| |||||| ||| ||||||||||| |||||||||||||||||    
T  12186946 aaaaatggtgggagaggtgcaacaaaaggacctcccaggaggccacccatcctagtactactctcgcccaag 12187017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12187290 - 12187361
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| ||||||||||||||||||||||||||||| || ||| ||||||||||  |||||||||||||||||    
T  12187290 aaaaatggtgggagaggtgcaacacaaggacttcctaggaggacacccatccttgtactactctcgcccaag 12187361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12188597 - 12188668
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||    
T  12188597 aaaaatggtgggagaggtgcaacacaaggacttctcaggaggacacccatcctcgtactactctcgcccaag 12188668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 12170057 - 12170123
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgccc 311  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||| || ||||||||||||||    
T  12170057 aaaggatgggagaggtgcaacacaaggacttcccaagaggtcacccatcatagtactactctcgccc 12170123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 12188949 - 12189011
Alignment:
Q  252 gggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  12188949 gggagaggtgcaacacaagaacttcccaggaggtcacccatcctagaactactctcgcccaag 12189011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12172765 - 12172834
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||| ||| ||||||||| ||||| |||||| |||||||| |||||||||||||||||    
T  12172765 aaagggtgggagaggttcaatacaaggactacccaggaggtcatccatcctagtactactctcgcccaag 12172834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12174115 - 12174184
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||  ||||||||||||| |||| |||||| |||||||| |||||||||||||||||    
T  12174115 aaagggtgggagaggttaaacacaaggactttccaggaggtcatccatcctagtactactctcgcccaag 12174184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12174781 - 12174850
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||| ||||||||||||| ||||| || ||| |||||||| |||||||||||||||||    
T  12174781 aaagggtgggagaggttcaacacaaggactacccaggagatcatccatcctagtactactctcgcccaag 12174850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12178567 - 12178636
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||  |||||||||||||||||| ||| |||||||| || |||||||||||||||||    
T  12178567 aaagggtgggagaggttaaacacaaggacttcccaggaggacacccatcatagtactactctcgcccaag 12178636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12183950 - 12184019
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||  ||||||||||||||| || ||||||||||||||| ||||||||||| |||||    
T  12183950 aaagggtgggagaggttaaacacaaggacttccaaggaggtcacccatcctagtactactctcgtccaag 12184019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12184614 - 12184683
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||| ||| |||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||    
T  12184614 aaagcgtgagagaggtgcaacacaaggactttccaggaggtcacccatcctggtactactctcgcccaag 12184683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12174454 - 12174525
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| ||||||||| |||||| |||||||||||| || | ||||||||||||| |||||||||||||||||    
T  12174454 aaaaatggtgggagatgtgcaatacaaggacttcctaggacgtcacccatcctagtactactctcgcccaag 12174525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12173774 - 12173843
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||  ||||||||||||| |||| |||||| |||||||| |||||||| ||||||||    
T  12173774 aaagggtgggagaggttaaacacaaggactttccaggaggtcatccatcctagtactactcccgcccaag 12173843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12179234 - 12179303
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||| ||||||||||| ||||||||||||||||||| |||||| |||||  | |||||||||||||||||    
T  12179234 aaagcgtgggagaggttcaacacaaggacttcccaggaggtcatccatcaaagtactactctcgcccaag 12179303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 12182722 - 12182783
Alignment:
Q  253 ggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||| ||||||||||||||||||| |||||| |||||| | |||||||||||||||||    
T  12182722 ggagaggttcaacacaaggacttcccaggaggtcatccatccaagtactactctcgcccaag 12182783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 12173433 - 12173501
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaa 313  Q
    |||||||||||||||| || |||||||||| ||||| || ||| |||||||| ||||||||||||||||    
T  12173433 aaagggtgggagaggttcagcacaaggactacccaggagatcatccatcctagtactactctcgcccaa 12173501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 12175124 - 12175192
Alignment:
Q  245 aaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||  |||||||||||||||||| | |||| |||||||| |||||||| ||||||||    
T  12175124 aaagggtgggagaggttaaacacaaggacttcccagga-gtcatccatcctagtactactcccgcccaag 12175192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 12176985 - 12177058
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttccc---agaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||| |||||||||||||||||| |||||||||||   || ||||||||||||||| ||||||||||| |||||    
T  12176985 aaaaatggtgggagaggtgcaacaaaaggacttccccctag-aggtcacccatcctagtactactctcgtccaag 12177058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 12170661 - 12170711
Alignment:
Q  261 gcaacacaaggacttcccagaaggtcacccatcctaatactactctcgccc 311  Q
    ||||||||| |||||||||| |||||||||||| || ||||||||||||||    
T  12170661 gcaacacaatgacttcccaggaggtcacccatcatagtactactctcgccc 12170711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 12169779 - 12169828
Alignment:
Q  262 caacacaaggacttcccagaaggtcacccatcctaatactactctcgccc 311  Q
    |||||||| |||||||||| |||||||||||| || ||||||||||||||    
T  12169779 caacacaatgacttcccaggaggtcacccatcatagtactactctcgccc 12169828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 4374979 - 4375037
Alignment:
Q  256 gaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||| |||| || | ||||| ||||||| |||||||||||| ||||    
T  4374979 gaggtgcaacacaaggatttcctaggaagtcacacatcctattactactctcgcacaag 4375037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 12170367 - 12170417
Alignment:
Q  261 gcaacacaaggacttcccagaaggtcacccatcctaatactactctcgccc 311  Q
    ||||||||| ||||||| || |||||||||||| || ||||||||||||||    
T  12170367 gcaacacaatgacttcctaggaggtcacccatcatagtactactctcgccc 12170417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 12185641 - 12185678
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccag 280  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  12185641 aaaaatggtgggagaggtgcgacacaaggacttcccag 12185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 12187633 - 12187670
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccag 280  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  12187633 aaaaatggtgggagaggtgcgacacaaggacttcccag 12187670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 17817980 - 17817947
Alignment:
Q  247 agggtgggagaggtgcaacacaaggacttcccag 280  Q
    ||||||||| ||||||||||||||||||||||||    
T  17817980 agggtgggataggtgcaacacaaggacttcccag 17817947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 19156126 - 19156159
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttc 276  Q
    ||||| ||||||||||||||||||||||||||||    
T  19156126 aaaaatggtgggagaggtgcaacacaaggacttc 19156159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 12170987 - 12171059
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaagt 315  Q
    ||||| || ||||||||||||||  |||||||||| || ||||||||| ||||| || || ||||||| ||||    
T  12170987 aaaaatggagggagaggtgcaactaaaggacttcctaggaggtcacccgtcctagtattattctcgccaaagt 12171059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 21825824 - 21825765
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  21825824 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 21825765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 25904730 - 25904789
Alignment:
Q  254 gagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaa 313  Q
    |||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| ||||    
T  25904730 gagaggtgcaacacaaggactttccaaaaggtcatccatcttaatactactctcgtccaa 25904789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 51)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24621693 - 24621752
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24621693 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24621752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24622012 - 24622071
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24622012 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24622331 - 24622390
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24622331 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24622615 - 24622674
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24622615 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24622899 - 24622958
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24622899 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24623502 - 24623561
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24623502 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24623561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24623821 - 24623880
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24623821 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24623880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24624414 - 24624473
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24624414 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24624473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24624733 - 24624792
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24624733 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24624792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24625017 - 24625076
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24625017 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24625076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24625336 - 24625395
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24625336 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24625395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24626909 - 24626968
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24626909 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24626968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24631395 - 24631454
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24631395 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24631454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24631714 - 24631773
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24631714 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24631773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24631998 - 24632057
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24631998 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24632282 - 24632341
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24632282 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24632601 - 24632660
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24632601 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24632885 - 24632944
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24632885 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24633169 - 24633228
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24633169 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24633228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24633488 - 24633547
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24633488 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24633547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24633807 - 24633866
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24633807 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24633866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24634091 - 24634150
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24634091 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24634150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24634694 - 24634753
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24634694 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24634753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24638773 - 24638832
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24638773 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24638832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24639092 - 24639151
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24639092 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24639151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24623218 - 24623277
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  24623218 agaggtgcaacacaaggacttcccaggaggtcacccatcctagnactactctcgcccaag 24623277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24627228 - 24627287
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  24627228 agaggtgcaacacaaggacttcccaggaggtcacccatcctagnactactctcgcccaag 24627287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24627512 - 24627571
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||    
T  24627512 agaggtgcaacacaangacttcccaggaggtcacccatcctagtactactctcgcccaag 24627571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24631111 - 24631170
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  24631111 agaggtgcaacacaaggacttcccangaggtcacccatcctagtactactctcgcccaag 24631170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24625978 - 24626037
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24625978 agaggtgcaaaacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24626037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24634410 - 24634469
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  24634410 agaggtgcaacacaaggacttcccaggaggtcacccatcctagcactactctcgcccaag 24634469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24638454 - 24638513
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  24638454 agaggtgcaacacaaggacttcccaggaggtcacccatcctagcactactctcgcccaag 24638513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 24626298 - 24626351
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcg 308  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  24626298 agaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcg 24626351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 3348060 - 3348119
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |||||    
T  3348060 agaggtgcaacacaaggacttcctaggaggtcacccatcctagtactactctcgtccaag 3348119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 24637837 - 24637890
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcg 308  Q
    |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||    
T  24637837 agaggtgcaaaacaaggacttcccaggaggtcacccatcctagtactactctcg 24637890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24619612 - 24619674
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatc---ctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||   ||| |||||||||||||||||    
T  24619612 agaggtgcaacacaaggacttcccaggaggtcacccatccanctagtactactctcgcccaag 24619674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24620760 - 24620822
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatc---ctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||   ||| |||||||||||||||||    
T  24620760 agaggtgcaacacaaggacttcccaggaggtcacccatccanctagtactactctcgcccaag 24620822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24621082 - 24621145
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||    |||||||| |||||||||||||||||    
T  24621082 agaggtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24621145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24621405 - 24621468
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccat----cctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||    |||| |||||||||||||||||    
T  24621405 agaggtgcaacacaaggacttcccaggaggtcacccatccnncctagtactactctcgcccaag 24621468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24625655 - 24625718
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccat----cctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||    |||| |||||||||||||||||    
T  24625655 agaggtgcaacacaaggacttcccaggaggtcacccatccancctagtactactctcgcccaag 24625718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24626621 - 24626684
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaa----tactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||||||     |||||||||||||||||    
T  24626621 agaggtgcaacacaaggacttcccaggaggtcacccatcctacctagtactactctcgcccaag 24626684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24635565 - 24635628
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||    |||||||| |||||||||||||||||    
T  24635565 agaggtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24635628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24636266 - 24636329
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||    |||||||| |||||||||||||||||    
T  24636266 agaggtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24636329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24636589 - 24636652
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||    |||||||| |||||||||||||||||    
T  24636589 agaggtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24636652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24637514 - 24637577
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaa----tactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||||||     |||||||||||||||||    
T  24637514 agaggtgcaacacaaggacttcccaggaggtcacccatcctacctagtactactctcgcccaag 24637577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24639441 - 24639504
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||    |||||||| |||||||||||||||||    
T  24639441 agaggtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24639504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24639764 - 24639827
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccat----cctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||||||    |||| |||||||||||||||||    
T  24639764 agaggtgcaacacaaggacttcccaggaggtcacccatccnncctagtactactctcgcccaag 24639827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24640087 - 24640150
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||||| |||||||    |||||||| |||||||||||||||||    
T  24640087 agaggtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24640150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24635242 - 24635305
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||| | |||||||    |||||||| |||||||||||||||||    
T  24635242 agaggtgcaacacaaggacttcccnggaggtcacccatccatcctagtactactctcgcccaag 24635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 24636912 - 24636975
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcac----ccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||||| | |||||||    |||||||| |||||||||||||||||    
T  24636912 agaggtgcaacacaaggacttccctggaggtcacccatccatcctagtactactctcgcccaag 24636975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 32352412 - 32352347
Alignment:
Q  249 ggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||| |||||||||||||||| |||||   | |||||||||||||||||||| ||| ||| |||||    
T  32352412 ggtgagagaggtgcaacacaaagactttttaaaaggtcacccatcctaataccactttcgtccaag 32352347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 112 - 53
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  112 agaggtgcaacacacggacttcccaggaggtcacccatcctagtactactctcgcccaag 53  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 14903217 - 14903158
Alignment:
Q  255 agaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||||    
T  14903217 agaggtgcaacacaaggacttttcaggaggtcacccatcctagtactactctcgcccaag 14903158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 16990144 - 16990093
Alignment:
Q  263 aacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    |||||||||||||||||  ||||||| ||||||| |||||||||||||||||    
T  16990144 aacacaaggacttcccaataggtcactcatcctagtactactctcgcccaag 16990093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 30729418 - 30729467
Alignment:
Q  259 gtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcg 308  Q
    ||||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  30729418 gtgcaacacaatgacttttcagaaggtcacccatcctaatgctactctcg 30729467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 2557949 - 2557895
Alignment:
Q  259 gtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaa 313  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  2557949 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 2557895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 12891610 - 12891645
Alignment:
Q  257 aggtgcaacacaaggacttcccagaaggtcacccat 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  12891610 aggtgcaacacaaggacttcccagaaggtcacccat 12891645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 42435297 - 42435349
Alignment:
Q  244 aaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatccta 296  Q
    |||| |||||||||||||||||||||||| |||||| || ||||| |||||||    
T  42435297 aaaatggtgggagaggtgcaacacaaggatttcccataacgtcactcatccta 42435349  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 19426010 - 19426053
Alignment:
Q  256 gaggtgcaacacaaggacttcccagaaggtcacccatcctaata 299  Q
    |||||||||| |||||| || |||||||||||||||||||||||    
T  19426010 gaggtgcaacgcaaggattttccagaaggtcacccatcctaata 19426053  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 282
Target Start/End: Original strand, 38580338 - 38580369
Alignment:
Q  251 tgggagaggtgcaacacaaggacttcccagaa 282  Q
    ||||||||||||||||||||||||||||||||    
T  38580338 tgggagaggtgcaacacaaggacttcccagaa 38580369  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 13642566 - 13642504
Alignment:
Q  243 aaaaagggtgggagaggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctc 307  Q
    ||||||||||| |||  ||||||||||||| ||||||  |||||||||||| || ||||||||||    
T  13642566 aaaaagggtggaaga--tgcaacacaaggatttcccatgaggtcacccatcttagtactactctc 13642504  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 24724671 - 24724728
Alignment:
Q  257 aggtgcaacacaaggacttcccagaaggtcacccatcctaatactactctcgcccaag 314  Q
    ||||||||||||||||||| |||  |||| |||| | |||||| ||||||||||||||    
T  24724671 aggtgcaacacaaggactttccacgaggttacccgttctaatattactctcgcccaag 24724728  T

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