View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_24 (Length: 342)
Name: NF20197_low_24
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 32138864 - 32138572
Alignment:
| Q |
18 |
aaaatgtcgtggtttcacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaac |
117 |
Q |
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| T |
32138864 |
aaaatgtcgtggtttcacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaactggtgcttctggtatggctggtcttggaagaac |
32138765 |
T |
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| Q |
118 |
caaaatagctcttccatctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32138764 |
caaaatagctcttccatctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggat |
32138665 |
T |
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| Q |
218 |
ggaccttacggttttcttcccaacgttgtttttgattcagattcgcttacatatacaccgcttttgatcaatcctgttagcacaggttctgct |
310 |
Q |
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| T |
32138664 |
ggaccttacggttttcttcccaacgttgtttttgactcggattcgcttacatatacaccgcttttgatcaatcctgttagcacagcttctgct |
32138572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 32148254 - 32147970
Alignment:
| Q |
18 |
aaaatgtcgtggtttcacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaac |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32148254 |
aaaatgtcatggtttcacgcttcctattctcatgtgcacgaactttcttactagaaggacttgcaagtggtgcttctggtatggctggtcttggaagaaa |
32148155 |
T |
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| Q |
118 |
caaaatagctcttccatctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggat |
217 |
Q |
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| T |
32148154 |
caaattagctcttccatctcaattagcttcggcttttagcttcgctaaaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggat |
32148055 |
T |
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| Q |
218 |
ggaccttacggttttcttcccaacgttgtttttgattcagattcgcttacatatacaccgcttttgatcaatcctgttagcacag |
302 |
Q |
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||||||||||||||||| |||||||| ||||||||||| | || || ||||| |||||||||||||||||||| ||||||||| |
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| T |
32148054 |
ggaccttacggttttctccccaacgtcgtttttgattctaagtcactcacatacacaccgcttttgatcaatccctttagcacag |
32147970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 32127081 - 32126906
Alignment:
| Q |
18 |
aaaatgtcgtggtttcacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaac |
117 |
Q |
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|||||||||| ||||||||||| ||||| ||||| |||||||| | ||| || |||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
32127081 |
aaaatgtcgttgtttcacgctttctattttcatgcgcaccaacatcattattacgaggacttgcaggtggtgcttctggcatggctggtcttggaagaac |
32126982 |
T |
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| Q |
118 |
caaaatagctcttccatctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttca |
193 |
Q |
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|||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||| ||||| |||| |||||| |
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| T |
32126981 |
caaaatcgctcttccatctcaactagcttctgcttttattttcaaaagaaaatttgctttttgtttttcttcttca |
32126906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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