View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_25 (Length: 339)
Name: NF20197_low_25
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 28283414 - 28283727
Alignment:
| Q |
11 |
cataggaattcttaatcaaccaatacttatttctccggctccctccataaccaattaaggtgacagcatgagaaaaattgagcgactccttcggtccaca |
110 |
Q |
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| T |
28283414 |
cataggaattcttaatcaaccaatacttatttctgcggctccctccataaccaattaaggtgactgcatgagaaaaattgagcgactccttcggtccaca |
28283513 |
T |
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| Q |
111 |
tggtccgctaccaaatattccactttcatatttcttgaagtcatcgttaatcgcgattgcaactgtaaccggctgttctgccactgcttctaataggttt |
210 |
Q |
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| T |
28283514 |
tggtccgctaccaaatattccactttcatatttcttgaagtcatcgttaatcgcgattgcaactgtaaccggctgttgtgccactgcttctaataggttt |
28283613 |
T |
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| Q |
211 |
tgttcgccgggtgatactattacataaccatcaatttttgcagcacggtcttttctgttgctaaggcatgtacccactttttctgtgtaaggataatcca |
310 |
Q |
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| T |
28283614 |
tgttcgccgggtgatactattacataaccatcaattttcgcagcacggtcttttttgttgctaaggcatgtacccactttttctgtgtaaggataatcca |
28283713 |
T |
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| Q |
311 |
catcttttgctatt |
324 |
Q |
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| T |
28283714 |
catcttttgctatt |
28283727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 28004733 - 28004703
Alignment:
| Q |
101 |
tcggtccacatggtccgctaccaaatattcc |
131 |
Q |
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| T |
28004733 |
tcggtccacatggtccgctaccaaatattcc |
28004703 |
T |
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