View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_29 (Length: 311)
Name: NF20197_low_29
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 42781419 - 42781143
Alignment:
| Q |
18 |
atgaacggaatctgttcttttggatcatttacaggtggacaggatgatgaactgccatcgtgaaaataaatgtcatttagttctattaggagtaaatcag |
117 |
Q |
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| T |
42781419 |
atgaacggaatctgttcttttggatcatttacaggtggacaggatgatgaactgccatcgtgaaaataaatgtcatttagttctattaggagtaaatcag |
42781320 |
T |
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| Q |
118 |
cattttcgtcatagaaattgtaagagtcagtaaatttagttcttcaaattggcaaaatatcatttcagtcccttaaattgaacaatgttagtcaatttat |
217 |
Q |
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| T |
42781319 |
cattttcgtcatagaaattgttagagtcagtaaatttagttcttcaaattggcaaaatatcatttcagtcccttaaattgaacaatgttagtcaatttat |
42781220 |
T |
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| Q |
218 |
tcatttttcaaattcaccagaatgttgctaaaagttttatgtttgcaagagaatgttcaagtcaatatgcaggtctt |
294 |
Q |
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| T |
42781219 |
tcatttttcaaattcaccagaatgttactaaaagttttatgtttgcaagagactattcaagtcaatatgcaggtctt |
42781143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 35138604 - 35138530
Alignment:
| Q |
150 |
aatttagttcttcaaattggcaaaatatcatttcagtcccttaaattgaacaatgttagtcaatttattcatttt |
224 |
Q |
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| T |
35138604 |
aatttagtatttcaaatttgcgaaatagcaatttagtcccttaaattgaacaatgttagtcaatttcgtcatttt |
35138530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 41513780 - 41513890
Alignment:
| Q |
106 |
ggagtaaatcagcattttcgtcatagaaattgtaagagtcagtaaatttagttcttcaaattggcaaaatatcatttcagtcccttaaattgaacaatgt |
205 |
Q |
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| T |
41513780 |
ggagtaaataggcattttagtcactgaatttgcaagggtcagccaatttagtccttcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatat |
41513879 |
T |
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| Q |
206 |
tagtcaattta |
216 |
Q |
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| T |
41513880 |
caatcaattta |
41513890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 39777445 - 39777482
Alignment:
| Q |
117 |
gcattttcgtcatagaaattgtaagagtcagtaaattt |
154 |
Q |
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| T |
39777445 |
gcattttagtcatggaaattgtaagagtcagtaaattt |
39777482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 11567565 - 11567654
Alignment:
| Q |
110 |
taaatcagcattttcgtcatagaaattgtaagagtcagtaaatttagttcttcaaattggcaaaatatcatttcagtcccttaaattgaa |
199 |
Q |
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| T |
11567565 |
taaatcagcattttagtccttgaaattgtaagggtcggtcaatttagtccctcaaatttacaaaatggtaattcattcccttaaattgaa |
11567654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 34618401 - 34618348
Alignment:
| Q |
106 |
ggagtaaatcagcattttcgtcatagaaattgtaagagtcagtaaatttagttc |
159 |
Q |
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| T |
34618401 |
ggagtaaatcagcattttggtccttgaaattgtaagagtcaagcaatttagttc |
34618348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 34745838 - 34745785
Alignment:
| Q |
106 |
ggagtaaatcagcattttcgtcatagaaattgtaagagtcagtaaatttagttc |
159 |
Q |
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| T |
34745838 |
ggagtaaatcagcattttggtccttgaaattgtaagagtcaagcaatttagttc |
34745785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 46874566 - 46874610
Alignment:
| Q |
187 |
cccttaaattgaacaatgttagtcaatttattcatttttcaaatt |
231 |
Q |
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| T |
46874566 |
cccttaaattgaacaacttaagtcaatttagtcatttttcaaatt |
46874610 |
T |
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