View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_3 (Length: 778)
Name: NF20197_low_3
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 19 - 778
Target Start/End: Complemental strand, 31573789 - 31573031
Alignment:
| Q |
19 |
actgtgtaatgtgtatgtatgtatgatgctttaaatcactgttgactgtaattagtgattagttatgttgctacgttcacctccacctttaatcccacca |
118 |
Q |
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| T |
31573789 |
actgtgtaatgtgtatgtat--atgatgctttaaatcactgttgactgtaattagtgattagttatgttgctacgttcacctccacctttaatcccacca |
31573692 |
T |
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| Q |
119 |
acccctttttcacattctgccaatccttcttctatttatacactactaaaccaacttgttttattgtagcactttctggccttaattactctcagtttcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31573691 |
acccctttttcacattctgccaatccttcttctatttatacactactaaaccaacttgttttattgtagcactttctggccttaactactctcagtttcc |
31573592 |
T |
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| Q |
219 |
cattctcttctctaagttttatgttactatacagttttgacatgaaacttgtcccaagtgttagtttgatctaaaatattcctctctttgtctttagtgg |
318 |
Q |
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| T |
31573591 |
cattctcttctctaagttttatgttactagacagttttgacatgaaacttgtcccaagtgttagtttgatctaaaatattcctctctttgtcttttgtgg |
31573492 |
T |
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| Q |
319 |
ttctaagtgagtgctaccatactgtttctttgttgtaacaaaacaaaaccatatatatacctgtaaatcactcaatagcaatattgttatgatcacaaag |
418 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
31573491 |
ttctaagtgagtgctaacatactgtttctttgttgtaacaaaacaaaaccatatatatacctgcaaatcactcaacagcaatattgttatgatcacaaag |
31573392 |
T |
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| Q |
419 |
gaaaaagtgaagctgccagcatgatctaggtttggttatacgatagtagtattgggaaggaactatatacg--nnnnnnnnactgtaccacnnnnnnnta |
516 |
Q |
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| T |
31573391 |
gaaaaagtgaagctgccagcatgatctaggtttggttatacaatagtagtattgagaaggaactatatacgttttttttttactataccacaaaaaaaga |
31573292 |
T |
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| Q |
517 |
ttactctctttcacaaaataggtattaaagtgccatgatttttgcattactaataggaaaataatttttggacaccg-atttctcacnnnnnnnnnatat |
615 |
Q |
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| T |
31573291 |
ttactctctttcacaaaataggtattaaagtgccatgatttttgcattactaatgggaaaataaattttggacaccgaatttctcactttttttttatat |
31573192 |
T |
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| Q |
616 |
agataggaaataggttttggtggtannnnnnngtggtacagtagaaaatagccactatatccatacgagtagtactgctagcataaccctgactaggtca |
715 |
Q |
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| T |
31573191 |
agataggaaataggttttggtggtatttttttgtggtacagtaaaaaatagccgctatatccatacaagtagtactgctagcataaccctgactaggtca |
31573092 |
T |
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| Q |
716 |
tgctgtgctagcctcactccttcctatttggagaccaatatatcatcaaagttacctaccttc |
778 |
Q |
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| T |
31573091 |
tgctgtgctagcctcactccttcctatttggagacca--atatcatctaagttacctaccttc |
31573031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 411 - 446
Target Start/End: Original strand, 38348454 - 38348489
Alignment:
| Q |
411 |
tcacaaaggaaaaagtgaagctgccagcatgatcta |
446 |
Q |
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| T |
38348454 |
tcacaaaggaaaaagtgaagctgccagcatgatcta |
38348489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 744
Target Start/End: Original strand, 38348544 - 38348589
Alignment:
| Q |
699 |
taaccctgactaggtcatgctgtgctagcctcactccttcctattt |
744 |
Q |
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| T |
38348544 |
taaccttgactaggtcatgctgtgacagcctcactctttcctattt |
38348589 |
T |
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