View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_low_33 (Length: 297)

Name: NF20197_low_33
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_low_33
NF20197_low_33
[»] chr1 (3 HSPs)
chr1 (18-286)||(17583708-17583976)
chr1 (18-214)||(17592585-17592781)
chr1 (215-288)||(17591614-17591688)
[»] chr5 (11 HSPs)
chr5 (18-286)||(28475076-28475345)
chr5 (18-286)||(32763205-32763483)
chr5 (18-158)||(32768344-32768483)
chr5 (53-159)||(32755696-32755802)
chr5 (18-159)||(32557386-32557527)
chr5 (53-145)||(32752167-32752259)
chr5 (69-150)||(32655655-32655736)
chr5 (96-151)||(32858859-32858914)
chr5 (69-159)||(32748109-32748199)
chr5 (20-125)||(32651341-32651446)
chr5 (18-58)||(32660583-32660623)
[»] chr7 (3 HSPs)
chr7 (67-159)||(32895072-32895164)
chr7 (46-155)||(37577556-37577665)
chr7 (234-273)||(37577343-37577382)
[»] chr2 (2 HSPs)
chr2 (188-273)||(16752719-16752805)
chr2 (188-273)||(16757222-16757308)
[»] chr4 (1 HSPs)
chr4 (226-283)||(2166531-2166588)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 17583976 - 17583708
Alignment:
Q  18 gttgtaatcggcaagggtccgattgtcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttc 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17583976 gttgtaatcggcaagggtccggttgtcctctagttgcttaccgtcaaagatcagacgttgctggtgcactgcaatatcttccttgtcaagaatcttcttc 17583877  T
Q  118 ttcacattcattattgtgtctgaactctcaaccctcagggggtatgtctttcgagtctgggtcctgatgtagatttgcatctgcacaaaaattgccacta 217  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||    
T  17583876 ttcacattcattatcgtgtctgaactctccaccctcagggggtatgtctttccagtctgggtccttatgtagatttgcatctgcacaaaaattgccatta 17583777  T
Q  218 aatcaatgaagaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacaacctt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17583776 aatcaatgaagaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctt 17583708  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 17592781 - 17592585
Alignment:
Q  18 gttgtaatcggcaagggtccgattgtcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttc 117  Q
    |||||||||| |||||||||| |  || ||||||  ||||||| |||| |||| ||||||||||||||| | ||||| ||||||||||||||||||||||    
T  17592781 gttgtaatcgacaagggtccggtcctcatctagtaccttaccgccaaagatcaaacgttgctggtgcaccgggatattttccttgtcaagaatcttcttc 17592682  T
Q  118 ttcacattcattattgtgtctgaactctcaaccctcagggggtatgtctttcgagtctgggtcctgatgtagatttgcatctgcacaaaaattgcca 214  Q
    |||||||  ||||||||||||||||| |||||||| || |||||  || | | |||||||||| | ||||||||||| |||||||| | ||||||||    
T  17592681 ttcacatcgattattgtgtctgaactttcaacccttagagggtacctcctactagtctgggtcattatgtagatttgtatctgcaccacaattgcca 17592585  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 17591688 - 17591614
Alignment:
Q  215 ctaaatcaatga-agaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacaacctttg 288  Q
    |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17591688 ctaaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctttg 17591614  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 28475345 - 28475076
Alignment:
Q  18 gttgtaatcggcaagggtccgattgtcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttc 117  Q
    |||||||  |||||||||  |||||||||||||||||||||||||    || |||||||||| ||| | || |||  |||||||||||||||||||||||    
T  28475345 gttgtaactggcaagggtaagattgtcctctagttgcttaccgtcgttgattagacgttgctcgtgtattgggatcccttccttgtcaagaatcttcttc 28475246  T
Q  118 ttcacattcattattgtgtctgaactctcaaccctcagggggtatgtctttcgagtctgggtcct-gatgtagatttgcatctgcacaaaaattgccact 216  Q
    |||||||  | ||| ||||||||||||||||||||||||||   |||||||| | ||  | || |  | |||||||||||||||||| | || | ||| |    
T  28475245 ttcacatcgactatcgtgtctgaactctcaaccctcaggggaattgtctttccaatc-agatcttccacgtagatttgcatctgcaccacaaataccatt 28475147  T
Q  217 aaatcaat-gaagaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacaacctt 286  Q
    |||||| |  ||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||||    
T  28475146 aaatcagtaaaagaaaatttgagactgacatttcaagaactaatccaaaaatagaaaacactaacaacctt 28475076  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 32763483 - 32763205
Alignment:
Q  18 gttgtaatcggcaagggtccgattgtcctctagttgcttaccgtca---aatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttc 114  Q
    |||||||| |||||||||  | ||||||||||  |||||||||||    |  ||||||||||||| ||||| || |||  |||||||||||||||||||     
T  32763483 gttgtaattggcaagggtaaggttgtcctctaactgcttaccgtcgtcgatgatcagacgttgctcgtgcattgggatcccttccttgtcaagaatcttt 32763384  T
Q  115 ttcttcacattcattattgtgtctgaactctcaaccctcagggggtatgtctttcgagtctgggtcctgatgtagatttgcatctgcacaaaaattgcca 214  Q
    |||||||||||   |||||||||||||||||||||||||| ||||    |||||| |||| ||    | | |||||||||||||||||| | || | |||    
T  32763383 ttcttcacattttctattgtgtctgaactctcaaccctcaaggggatcatctttccagtcaggtcttttacgtagatttgcatctgcaccacaaatacca 32763284  T
Q  215 ctaaatcaatgaa-gaaaacttgag------attgatatttcaagaactgatccaaaaatagaaaacactaacaacctt 286  Q
     ||||||||| || ||||| |||||      ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  32763283 ttaaatcaataaaggaaaatttgagactcatatatatatttcaagaactgatccaaaaatagaaaacactaacaacctt 32763205  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 32768483 - 32768344
Alignment:
Q  18 gttgtaatcggcaagggtccgattgtcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttc 117  Q
    |||| ||| ||||||||||   ||||| ||| ||||| ||||| ||||||||| |||||| ||||| |||| |||  ||||||||| || || |||||||    
T  32768483 gttgcaattggcaagggtctcgttgtcatctcgttgcctaccggcaaatatcaaacgttgttggtgtactgggatcccttccttgtaaaaaa-cttcttc 32768385  T
Q  118 ttcacattcattattgtgtctgaactctcaaccctcagggg 158  Q
    |||||||| | ||| ||||||||| ||| ||||||||||||    
T  32768384 ttcacattaactatcgtgtctgaaatcttaaccctcagggg 32768344  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 32755802 - 32755696
Alignment:
Q  53 gcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccct 152  Q
    ||||||||||||| |  ||||| ||||||||||||| |||  ||||||||||| |||| ||||| ||||||| || ||| ||||||||||||| |||| |    
T  32755802 gcttaccgtcaaagaatagacgctgctggtgcactgggatcccttccttgtcatgaattttctttttcacatccagtatcgtgtctgaactcttaaccat 32755703  T
Q  153 caggggg 159  Q
     ||||||    
T  32755702 gaggggg 32755696  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 32557386 - 32557527
Alignment:
Q  18 gttgtaatcggcaagggtccgattgtcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttc 117  Q
    |||||||| |||||||||  |  |||| |||||| |||||  | |||| ||||||||||| |||||||||| |||   |||||||||||||||||| | |    
T  32557386 gttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttccttgtcaagaatcttatcc 32557485  T
Q  118 ttcacattcattattgtgtctgaactctcaaccctcaggggg 159  Q
    ||||||||   ||| |||||||||||||| ||| ||| ||||    
T  32557486 ttcacatttgctatcgtgtctgaactctccaccttcaagggg 32557527  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 32752259 - 32752167
Alignment:
Q  53 gcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactct 145  Q
    ||||||||||||| |  ||||| ||||||||||||| |||  ||||||||||| |||| |||||||||||||  | ||| |||||||||||||    
T  32752259 gcttaccgtcaaagaatagacgctgctggtgcactgggatcccttccttgtcatgaattttcttcttcacatcgagtatcgtgtctgaactct 32752167  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 32655655 - 32655736
Alignment:
Q  69 cagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaacc 150  Q
    |||||| |||| |||||| | |||  ||||||||||  ||||||||||||||||||  | ||||||||||||||||| ||||    
T  32655655 cagacgctgctcgtgcaccgggatcccttccttgtcctgaatcttcttcttcacatcgagtattgtgtctgaactcttaacc 32655736  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 32858914 - 32858859
Alignment:
Q  96 ttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccc 151  Q
    |||||||||||||||| ||| ||||||||| | ||| ||||||||||||| |||||    
T  32858914 ttccttgtcaagaatcatctccttcacattgactatcgtgtctgaactcttaaccc 32858859  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 32748199 - 32748109
Alignment:
Q  69 cagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccctcaggggg 159  Q
    ||||||||| ||||| || | |||  ||||||||||  ||| ||| ||||||||||| | ||| ||||||||||||| |||| ||||||||    
T  32748199 cagacgttgttggtggacagggatcccttccttgtcctgaacctttttcttcacattgagtatcgtgtctgaactcttaaccatcaggggg 32748109  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 32651341 - 32651446
Alignment:
Q  20 tgtaatcggcaagggtccgattgtcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttctt 119  Q
    |||||||||||||| ||||   |||||||||||| |||||  |||| |||| |||||| | || ||||| | | | ||||| ||||| |||||||| |||    
T  32651341 tgtaatcggcaaggatccggccgtcctctagttgtttaccagcaaagatcaaacgttggtcgtacactggggtcttttcctcgtcaacaatcttctcctt 32651440  T
Q  120 cacatt 125  Q
    ||||||    
T  32651441 cacatt 32651446  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 32660583 - 32660623
Alignment:
Q  18 gttgtaatcggcaagggtccgattgtcctctagttgcttac 58  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  32660583 gttgtaatcggcaagggtccaatcgtcctcaagttgcttac 32660623  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 32895164 - 32895072
Alignment:
Q  67 atcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccctcaggggg 159  Q
    ||||||| ||| | |||||||| |||||||||||| ||||||||||||| | | ||||| | |||  |||||||||||| |||| ||||||||    
T  32895164 atcagacattgattgtgcactgggatatcttccttctcaagaatcttctccattacattgaatatcctgtctgaactcttaaccatcaggggg 32895072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 37577665 - 37577556
Alignment:
Q  46 tctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactct 145  Q
    ||||||| ||||||| |||| ||||||||||||   |||| || |||  |||| |||||||||||||||| ||||||||    ||| |||||||||||||    
T  37577665 tctagttccttaccggcaaagatcagacgttgcatatgcattgggatcccttcattgtcaagaatcttctccttcacatcggctatcgtgtctgaactct 37577566  T
Q  146 caaccctcag 155  Q
     || ||||||    
T  37577565 taatcctcag 37577556  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 37577382 - 37577343
Alignment:
Q  234 ttgagattgatatttcaagaactgatccaaaaatagaaaa 273  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  37577382 ttgagactgatatttcaagaactaatccaaaaatagaaaa 37577343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 16752805 - 16752719
Alignment:
Q  188 agatttgcatctgcacaaaaattgccactaaatcaatgaa-gaaaacttgagattgatatttcaagaactgatccaaaaatagaaaa 273  Q
    |||||||||||||||| | ||||| || ||||||||| || ||||| |||||| ||||||||||||| ||| || |||| |||||||    
T  16752805 agatttgcatctgcaccacaattgacattaaatcaataaaagaaaatttgagactgatatttcaagagctggtctaaaattagaaaa 16752719  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 16757308 - 16757222
Alignment:
Q  188 agatttgcatctgcacaaaaattgccactaaatcaatgaa-gaaaacttgagattgatatttcaagaactgatccaaaaatagaaaa 273  Q
    ||||| |||||||||| | | ||| || ||||||||| || ||||| |||||| ||||||||||||||||| ||||||| |||||||    
T  16757308 agattcgcatctgcaccacagttgacattaaatcaataaaagaaaaattgagactgatatttcaagaactggtccaaaattagaaaa 16757222  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 2166531 - 2166588
Alignment:
Q  226 aagaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacaac 283  Q
    ||||||| |||||| |||||| ||||  ||||| |||||||||||||||| |||||||    
T  2166531 aagaaaatttgagactgatatatcaatgactgagccaaaaatagaaaacaataacaac 2166588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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