View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_35 (Length: 294)
Name: NF20197_low_35
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 11685544 - 11685810
Alignment:
| Q |
20 |
atagcatgatgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaaacaaataggactgatactgtat |
119 |
Q |
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| T |
11685544 |
atagcatgatgtagagaaagtgcaagaatcaagaatgaaatccaagaaagtgct-----ggaatggaattcactagaaacaaataggacagataccgtat |
11685638 |
T |
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| Q |
120 |
tatgaatatgcaaattagaaaaattgagagctcaaatgcatgctaggagtaaagtgattttccctacttcattcaattattta-tacatgtaggtagtca |
218 |
Q |
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| T |
11685639 |
tatgaatatgcaaattagaaaaattgagagctcaaatgcatgataggagtaaagtgattttccttacttcattcaatgatctagtaaa--taggtagtca |
11685736 |
T |
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| Q |
219 |
ccgtcataagctaagctatgtctgttataggatagagtgacttacataacaagtaactgaatctaactaacttt |
292 |
Q |
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| T |
11685737 |
tcgtcataagctaagctatgtctgttataggatagagtgacttacataacaagtaactaaatctaactaacttt |
11685810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 11715529 - 11715263
Alignment:
| Q |
20 |
atagcatgatgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaaacaaataggactgatactgtat |
119 |
Q |
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| T |
11715529 |
atagcatgatgtagagaaagtgcaagaatcaagaatgaaatccaagaaagtgct-----ggaatggaattcactagaaacaaataggacagataccgtat |
11715435 |
T |
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| Q |
120 |
tatgaatatgcaaattagaaaaattgagagctcaaatgcatgctaggagtaaagtgattttccctacttcattcaattattta-tacatgtaggtagtca |
218 |
Q |
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| T |
11715434 |
tatgaatatgcaaattagaaaaattgagagctcaaatgcatgataggagtaaagtgatttttcttacttcattcaatgatctagtaaa--taggtagtca |
11715337 |
T |
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| Q |
219 |
ccgtcataagctaagctatgtctgttataggatagagtgacttacataacaagtaactgaatctaactaacttt |
292 |
Q |
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| T |
11715336 |
tcgtcataagctaagctatgtctgttataggatagagtgacttacataacaagtaactaaatctaactaacttt |
11715263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 27653254 - 27653389
Alignment:
| Q |
20 |
atagcatgatgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaa-acaaataggactgatactgta |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||| |||| ||||||||||||| |
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| T |
27653254 |
atagcatgatgtagagatagtgcaagaatcaagaataaaaccctagaaagtgcaggaatggaatggaattcacaagaatgaaaatgtgactgatactgta |
27653353 |
T |
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| Q |
119 |
ttatgaatatgcaaattagaaaaattgagagctcaaa |
155 |
Q |
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| T |
27653354 |
ttatgaatatgcaaattag-aaaattgagagctcaaa |
27653389 |
T |
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