View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_36 (Length: 282)
Name: NF20197_low_36
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 7500608 - 7500877
Alignment:
| Q |
1 |
cagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccataattcctcgttgttgcagatcaa |
100 |
Q |
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| T |
7500608 |
cagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccataattcctcgttgttgcagatcaa |
7500707 |
T |
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| Q |
101 |
gtggcgaaggtcagaacatacacaggacaatgccattaaggctgccccatcgaggcgtggaaggatataggtctggatgatgtctggatctaacctactg |
200 |
Q |
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| T |
7500708 |
gtggcgaaggtcggaacatacacaggacaatgccattaaggctgccccatcgaggcgtggaaggatataggtctggatgatgtctggatctaacctactg |
7500807 |
T |
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| Q |
201 |
aaattattcatgatgggtgaagggagttttctttaagcagcaaatgaatatttattaaaatagagagatg |
270 |
Q |
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| T |
7500808 |
aaattattcatgatgggtgaagggagttttcttttagcagcaaatgaatatttattaaaatagaaagatg |
7500877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 8057240 - 8057200
Alignment:
| Q |
177 |
atgatgtctggatctaacctactgaaattattcatgatggg |
217 |
Q |
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| T |
8057240 |
atgatgtctggacataacctactgaaattattcatgatggg |
8057200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 27240882 - 27240723
Alignment:
| Q |
46 |
aaggccacatggaggtgcaaatgttccgccataattcctcgttgttg---cagatcaagtggcgaaggtcagaacatacacaggacaatgccattaaggc |
142 |
Q |
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| T |
27240882 |
aaggccactttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagagaataagacgattaaggt |
27240783 |
T |
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| Q |
143 |
tgccccatcgaggcgtggaaggatataggtctggatgatgtctggatctaacctactgaa |
202 |
Q |
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| T |
27240782 |
tgtgccgtcgaggcggggaaggatgtgggtatgcatgatgtctggatctaacctactgaa |
27240723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 27253177 - 27253110
Alignment:
| Q |
60 |
gtgcaaatgttccgccataattcctcgttgttgcagatcaagtggcgaaggtcagaacatacacagga |
127 |
Q |
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| T |
27253177 |
gtgcatatgttccgccatagatcttcgttgttgcagatcatgtggcggagttctgaagatacacagga |
27253110 |
T |
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