View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_low_42 (Length: 255)

Name: NF20197_low_42
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_low_42
NF20197_low_42
[»] chr1 (2 HSPs)
chr1 (1-241)||(17583475-17583716)
chr1 (1-241)||(17591382-17591624)
[»] chr5 (13 HSPs)
chr5 (79-241)||(32762975-32763136)
chr5 (116-241)||(28474835-28474960)
chr5 (116-236)||(32858229-32858352)
chr5 (143-240)||(32740066-32740163)
chr5 (145-217)||(32651840-32651912)
chr5 (143-219)||(32656093-32656169)
chr5 (120-183)||(32710231-32710294)
chr5 (145-234)||(32767882-32767971)
chr5 (146-241)||(25469550-25469645)
chr5 (86-173)||(25477501-25477588)
chr5 (12-66)||(28475016-28475072)
chr5 (12-62)||(32557754-32557806)
chr5 (172-216)||(32662009-32662053)
[»] chr7 (3 HSPs)
chr7 (101-241)||(7969877-7970017)
chr7 (116-221)||(37577114-37577219)
chr7 (7-66)||(37577263-37577324)
[»] chr4 (1 HSPs)
chr4 (116-214)||(21524552-21524653)
[»] chr2 (3 HSPs)
chr2 (138-221)||(16756981-16757064)
chr2 (143-234)||(16752463-16752554)
chr2 (12-67)||(16752637-16752694)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 17583716 - 17583475
Alignment:
Q  1 aacaacctttgtttggcatttgaaaaactgaagaataagataaaatgctagagtataaattcaaaatatnnnnnnnnn-taacaaaactttaactggggg 99  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  17583716 aacagccttcgtttggcatttgaaaaactgaagaataagataaaatgctagagtataaattcaaaatataaaaaaaaaataacaaaactttaactggggg 17583617  T
Q  100 gaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17583616 gaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaac 17583517  T
Q  200 tctgatgaaagagttgctaaaggaacctgttggacgttcttc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17583516 tctgatgaaagagttgctaaaggaacctgttggacgttcttc 17583475  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 17591624 - 17591382
Alignment:
Q  1 aacaacctttgtttggcatttgaaaaactgaagaataagataaaatgctagagtata--aattcaaaatatnnnnnnnnntaacaaaactttaactgggg 98  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | ||         ||| || ||||||| ||| |    
T  17591624 aacagcctttgtttggcatttgaaaaactgaagaataagataaaatgctagagtatataaattcaatacataaaagaaaataataagactttaattggag 17591525  T
Q  99 ggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaa 198  Q
    | |||||||||||||  |||||||| |||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  17591524 gaaaaaaccaaagcaaagaaaaggagataggaggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaa 17591425  T
Q  199 ctctgatgaaagagttgctaaaggaacctgttggacgttcttc 241  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  17591424 ctctgatgaaagagttgctaaagtaacttgttggacgttcttc 17591382  T

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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 32763136 - 32762975
Alignment:
Q  79 taacaaaactttaactggggggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaa 178  Q
    |||||| ||||||| |||||  |||||| ||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||| | |||| ||||||    
T  32763136 taacaagactttaattgggga-aaaaacaaaagcaaagaaaaggagataggaggtaccatgggggttatgcaaatatctagcttgagaggttcggaagaa 32763038  T
Q  179 ccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttc 241  Q
     |||||||||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||    
T  32763037 gcaaatggaatcacaagaaactctgatgaaagagttgctaaagcaacacgttggacgttcttc 32762975  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 28474960 - 28474835
Alignment:
Q  116 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttg 215  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  28474960 gaaaaggagataggaggtaccatgggggttatacaaatatctagcttgagaggttcggaagaaccaaatggaatcacaagcaactctgatgaaggagttg 28474861  T
Q  216 ctaaaggaacctgttggacgttcttc 241  Q
    |||||| ||||| |||||||||||||    
T  28474860 ctaaagcaacctcttggacgttcttc 28474835  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 32858352 - 32858229
Alignment:
Q  116 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagt---tcagaagaaccaaatggaatcacaagcaactctgatgaaagag 212  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||   | ||   ||| ||||||||||||||||||||||  |||||||||||||||    
T  32858352 gaaaaggagataggaggtaccatgggggctatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggcactctgatgaaagag 32858253  T
Q  213 ttgctaaaggaacctgttggacgt 236  Q
    ||||||||| || | |||||||||    
T  32858252 ttgctaaagtaaaccgttggacgt 32858229  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 32740163 - 32740066
Alignment:
Q  143 gttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttctt 240  Q
    ||||||||||| |||| ||||| | |||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| || ||||||||| |||||    
T  32740163 gttatgcaaatttctaacttgagaggttcagaagaactaaatggaatcacaaggaactttgatgaaagatttgctaaagtaatctgttggacattctt 32740066  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 32651840 - 32651912
Alignment:
Q  145 tatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgct 217  Q
    ||||||||| |||||||| | | |||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  32651840 tatgcaaatttctagcttcagaggttcagaagaaccaaatggaatcacaaggaactctgatgaaagatttgct 32651912  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 32656093 - 32656169
Alignment:
Q  143 gttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaa 219  Q
    ||||||||||| |||||||||| |  |||| |||||||||||||||||||||||||||| || ||||||||||||||    
T  32656093 gttatgcaaatttctagcttgagagcttcaaaagaaccaaatggaatcacaagcaactccgacgaaagagttgctaa 32656169  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 32710294 - 32710231
Alignment:
Q  120 aggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaa 183  Q
    |||| |||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||    
T  32710294 aggagataggaggtaccttgggggttatgcaaatttctagctcgagaagttcagaagaaccaaa 32710231  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 32767971 - 32767882
Alignment:
Q  145 tatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggac 234  Q
    ||||||||| ||||||||||   |||||||||| |||| |||||||||||| | |||||||| |||||||||||||| || ||| |||||    
T  32767971 tatgcaaatttctagcttgagtggttcagaagagccaactggaatcacaaggagctctgatggaagagttgctaaagtaaactgctggac 32767882  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 25469645 - 25469550
Alignment:
Q  146 atgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttc 241  Q
    |||||||| |||| || || | |||||||| ||||||||||||||||||| |||| |||||||||||||   |||| |||| ||||||| ||||||    
T  25469645 atgcaaatttctatctcgagaggttcagaaaaaccaaatggaatcacaaggaactttgatgaaagagttttcaaagtaacccgttggacattcttc 25469550  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 25477588 - 25477501
Alignment:
Q  86 actttaactggggggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcag 173  Q
    |||||||  ||||||||||| ||||| |  |||||||| |||||||||||| |||||||||||||||| |||| ||||| | ||||||    
T  25477588 actttaataggggggaaaaaacaaagtaaagaaaaggatataggaggtaccatgggggttatgcaaatttctatcttgagaggttcag 25477501  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 28475072 - 28475016
Alignment:
Q  12 tttggcatttgaaaaactgaagaata--agataaaatgctagagtataaattcaaaa 66  Q
    |||||||||| ||||||||| ||||   ||||||||||||| |||||||||||||||    
T  28475072 tttggcatttcaaaaactgatgaatttgagataaaatgctatagtataaattcaaaa 28475016  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 32557754 - 32557806
Alignment:
Q  12 tttggcatttgaaaaactgaagaa--taagataaaatgctagagtataaattc 62  Q
    |||||||||||||||||||| |||  | |||||||||||||||||||| ||||    
T  32557754 tttggcatttgaaaaactgatgaatttgagataaaatgctagagtatatattc 32557806  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 32662009 - 32662053
Alignment:
Q  172 agaagaaccaaatggaatcacaagcaactctgatgaaagagttgc 216  Q
    |||||||||||||||||||| ||| |||||||| ||| |||||||    
T  32662009 agaagaaccaaatggaatcaaaaggaactctgaggaaggagttgc 32662053  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 7969877 - 7970017
Alignment:
Q  101 aaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaact 200  Q
    |||||||||||||  |||||||| |||||   |||| |||||||||||||||| |||||||||| | |||||||||||| ||||||||||||||| ||||    
T  7969877 aaaaaccaaagcaaagaaaaggagatagggcataccgtgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaact 7969976  T
Q  201 ctgatgaaagagttgctaaaggaacctgttggacgttcttc 241  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  7969977 ctgatgaaagagttgctaaagtaaactgttggacgttcttc 7970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 37577219 - 37577114
Alignment:
Q  116 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttg 215  Q
    |||||||| |||||||||||| |||||| ||||||||| ||||||| || | |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  37577219 gaaaaggatataggaggtaccatgggggatatgcaaatttctagctcgagaggttcagaagaaccaaatggaatcacaaggaactctaatgaaagagttg 37577120  T
Q  216 ctaaag 221  Q
     |||||    
T  37577119 ataaag 37577114  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 37577324 - 37577263
Alignment:
Q  7 ctttgtttggcatttgaaaaactgaagaata--agataaaatgctagagtataaattcaaaa 66  Q
    |||| |||||||||||||||||||| ||||   |||| ||||||||||||||||||||||||    
T  37577324 ctttttttggcatttgaaaaactgatgaatttgagattaaatgctagagtataaattcaaaa 37577263  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 21524653 - 21524552
Alignment:
Q  116 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgaca---agttcagaagaaccaaatggaatcacaagcaactctgatgaaagag 212  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||   |    ||||| ||||||||||||||||||||||  ||||| |||||||||    
T  21524653 gaaaaggagataggaggtaccatgggggttatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggcactctcatgaaagag 21524554  T
Q  213 tt 214  Q
    ||    
T  21524553 tt 21524552  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 16757064 - 16756981
Alignment:
Q  138 tgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaag 221  Q
    |||| |||||||||||  | |||| || | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  16757064 tgggagttatgcaaattacaagctcgagaggttcagaagaaccaattggaatcacaaggaactctgatgaaagagttgctaaag 16756981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 16752554 - 16752463
Alignment:
Q  143 gttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggac 234  Q
    ||||||||||| |||||||||| | |||  |||||||||  |||||||| ||| ||||||| |||||||||| |||||| ||||||||||||    
T  16752554 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggac 16752463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 16752694 - 16752637
Alignment:
Q  12 tttggcatttgaaaaactgaagaata--agataaaatgctagagtataaattcaaaat 67  Q
    |||||||| |||||||| |||||||   ||||||| ||||||||||||||||||||||    
T  16752694 tttggcatgtgaaaaaccgaagaatttgagataaattgctagagtataaattcaaaat 16752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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