View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20197_low_46 (Length: 239)

Name: NF20197_low_46
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20197_low_46
NF20197_low_46
[»] chr2 (7 HSPs)
chr2 (54-151)||(11689907-11690004)
chr2 (138-200)||(11690023-11690085)
chr2 (138-200)||(11720978-11721040)
chr2 (54-151)||(11721059-11721151)
chr2 (54-187)||(11730133-11730265)
chr2 (128-179)||(11687254-11687305)
chr2 (128-179)||(11672778-11672829)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 11689907 - 11690004
Alignment:
Q  54 attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattcttattaccatttcataagatgaccatttc 151  Q
    ||||| |||| ||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  11689907 attaaacaattaagattatttagtgaaggactagccggatggcagcacataactttagcttattgattcttattaccatttcacaagatgaccatttc 11690004  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 11690023 - 11690085
Alignment:
Q  138 aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggcttgcaaccaaca 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11690023 aagatgatcatttcatttttaagttaggacggcatatttgtgattgtgggcatgcaaccaaca 11690085  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 11721040 - 11720978
Alignment:
Q  138 aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggcttgcaaccaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11721040 aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggaatgcaaccaaca 11720978  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 11721151 - 11721059
Alignment:
Q  54 attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattcttattaccatttcataagatgaccatttc 151  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||| ||||      |||||||||||||||||||||||| ||||||||||||||    
T  11721151 attaatcaattaagattatttagtgaaggactagccggatggcagcacgtaaa-----gttattgattcttattaccatttcacaagatgaccatttc 11721059  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 11730265 - 11730133
Alignment:
Q  54 attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattctta---ttaccatttcataagatgaccattt 150  Q
    |||||||||| |||||||||||||||     |||||||||| ||| |||| | |||| | |||| |||||||   | |||||||||||||||||||||||    
T  11730265 attaatcaattaagattatttagtgac----tagccgaatgacagtacatcacattaacatattaattcttacagtcaccatttcataagatgaccattt 11730170  T
Q  151 catttttaagttaggacggcatatttgtgattgtggg 187  Q
    |||||||  |||||||||||||||||||| |||||||    
T  11730169 catttttttgttaggacggcatatttgtgcttgtggg 11730133  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 11687254 - 11687305
Alignment:
Q  128 accatttcataagatgaccatttcatttttaagttaggacggcatatttgtg 179  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  11687254 accatttcataagatgaccatttcatttttttgttaggacggcatatttgtg 11687305  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 11672829 - 11672778
Alignment:
Q  128 accatttcataagatgaccatttcatttttaagttaggacggcatatttgtg 179  Q
    ||||||||| ||||||||||||||| |||| | |||||||||||||||||||    
T  11672829 accatttcaaaagatgaccatttcagttttcacttaggacggcatatttgtg 11672778  T

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