View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_47 (Length: 238)
Name: NF20197_low_47
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 42817906 - 42818107
Alignment:
| Q |
17 |
acttgcatgtgtggctaagacaccagatatgaggcctagaatggatgaagctgttagaatgattgaggaaattaaacatcctgagtttaagaacagaaca |
116 |
Q |
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| T |
42817906 |
acttgcatgtgtggctaagacaccagatatgaggcctagaatggatgaagctgttagaatgattgaggaaattaaaaatcctgagtttaagaacagaaca |
42818005 |
T |
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| Q |
117 |
tcctctgaatctgaatattctaatgtgcagacaccataagttaactcactcttttgcctctgtcaacagatatgttcaaccaataagcacatttttcttt |
216 |
Q |
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| T |
42818006 |
tcctctgaatctgaatattctaatgtgcagacaccataagttaactcactcttttgcctatgtcaacagatatgttcaaccaataagcacatttttcttt |
42818105 |
T |
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| Q |
217 |
gt |
218 |
Q |
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|| |
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| T |
42818106 |
gt |
42818107 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 28842447 - 28842523
Alignment:
| Q |
56 |
aatggatgaagctgttagaatgattgaggaaattaaacatcctgagtttaagaacagaacatcctctgaatctgaat |
132 |
Q |
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||||||||||| |||||||| || | |||||||| || |||||||| ||||| || ||||| ||||||||||||| |
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| T |
28842447 |
aatggatgaagttgttagaaacatggcggaaattaggcaccctgagttgaagaaaagtacatcttctgaatctgaat |
28842523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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