View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20197_low_48 (Length: 237)
Name: NF20197_low_48
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_48 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 2516902 - 2517108
Alignment:
| Q |
16 |
aattctcttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttc |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516902 |
aattttcttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttc |
2517001 |
T |
|
| Q |
116 |
ggaatataagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgacactg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2517002 |
ggaatataagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgacactg |
2517101 |
T |
|
| Q |
216 |
acaatga |
222 |
Q |
| |
|
||||||| |
|
|
| T |
2517102 |
acaatga |
2517108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 2515727 - 2515776
Alignment:
| Q |
135 |
aagaccttgattgttgttattgtaattagggaaattcaaaacctatgaag |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
2515727 |
aagaccttgattgttgttattgtaattagggaaatttagaacctatgaag |
2515776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 2506022 - 2506128
Alignment:
| Q |
52 |
agaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaatataagtattgagcaaagaccttgattgttgt |
151 |
Q |
| |
|
|||||||||||||| ||||| | |||||| |||||||||| ||| | | | |||||| ||||| |||||| || |||||||| ||||||||||||| |
|
|
| T |
2506022 |
agaattgaaattttgtaataaaattaggctaattctagtattttggttacattacagtaatttcgtaatatagctagtgagcaaaaaccttgattgttga |
2506121 |
T |
|
| Q |
152 |
tattgta |
158 |
Q |
| |
|
||||||| |
|
|
| T |
2506122 |
tattgta |
2506128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 2512642 - 2512692
Alignment:
| Q |
16 |
aattctcttcgattaggctaactatgt-aacacttgtagaattgaaatttt |
65 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
2512642 |
aattctcttcaattaggctaactatgtaaacatttctagaattgaaatttt |
2512692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University