View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_5 (Length: 493)
Name: NF20197_low_5
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 35550616 - 35550154
Alignment:
| Q |
17 |
atccaaaaataataatatggattcaacctacaaacttctgatgacaccaactatcactgttcaccagttcaagtcaacaaattctgcaaatttgatgaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35550616 |
atccaaaaataataatatggattcaacctacaaacttatgatgacaccaactatcactgttcaccagttcaagtcaacaaattctgcaaatttgatgaca |
35550517 |
T |
|
| Q |
117 |
attataaacctgccaacaccaataaaacagagaaaaattaagcacagtacaaaaatcaaatattttccacataataaagaatttccagatcagaaaatat |
216 |
Q |
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| T |
35550516 |
attataaacctgccaacaccaataaaacagagaaaaattaagcacagtacaaaaatcaaatattttccacataataaagaatttccagatcagaaaatat |
35550417 |
T |
|
| Q |
217 |
aaactagtatcttcaatatatatccaccaaaaactcaaatcttccaaattaga-nnnnnnnnncttctttcacatccaacaaagctataaaccttaatag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35550416 |
aaactagtatcttcaatatatatccaccaaaaactcaaaacttccaaattagattttttttttcttctttcacatccaacaaagctataaaccttaatag |
35550317 |
T |
|
| Q |
316 |
aatatcattaaaaaactcaaattcgccaattgccaataaaaaatatcaattgataaagtattaaaatttcccgcttttatccaaagacaaatagatcagg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35550316 |
aatatcattaaaaaactcaaattcgccaattgccaataaaaaatatcaattgataaagtattaaaatttcccgctttcatccaaagacaaatagatcagg |
35550217 |
T |
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| Q |
416 |
gaaattaccaatatcacaaatcaaatttcacccttgaatcnnnnnnntcaaagtacaagtaaa |
478 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35550216 |
gcaattaccaatatcacaaatcaaatttcacccttgaatcaaaaaaatcaaagtacaagtaaa |
35550154 |
T |
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