View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_52 (Length: 232)
Name: NF20197_low_52
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 35210669 - 35210871
Alignment:
| Q |
18 |
taaaccagtcaaacaacttgaggcaaaattagaatcaaatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaactgttctatgtcga |
117 |
Q |
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| T |
35210669 |
taaaccagtcaaacaactcgaggcaaaattagaatcaaatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaattgttctatgtcga |
35210768 |
T |
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| Q |
118 |
aaacactaaatattagacatattattaattacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggcctttg |
217 |
Q |
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| T |
35210769 |
aaacactaaatattagacatattattaattacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggccttgg |
35210868 |
T |
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| Q |
218 |
ctt |
220 |
Q |
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| T |
35210869 |
ctt |
35210871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 43998505 - 43998564
Alignment:
| Q |
147 |
tacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagc |
206 |
Q |
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||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
43998505 |
tacctgaggaccttgctctacacccttcttaaatggatcaccaacaacacgtctcaaagc |
43998564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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