View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_60 (Length: 210)
Name: NF20197_low_60
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 27444177 - 27444349
Alignment:
| Q |
19 |
caaacaaaatatgccgtcttaattaatttttgttaatttttgtcnnnnnnnnnnnntaagtgcatgtatacaaatgaaacatatacagacacatttgtca |
118 |
Q |
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| T |
27444177 |
caaacaaaatatgccgtcttaattaatttttgttaatttttgtcaaaaataaaa--taagtgcatgtatacaaatgaa-cgtatacagacacatttgtca |
27444273 |
T |
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| Q |
119 |
tgtaatataaaccacaagtattttcaattattattgcagtaannnnnnnataatttattgtcttgatgggtgtatt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
27444274 |
tgtaatataaaccacaagtattttcaattattattgcagtaatttttttataatttattgtcttgatgggtttatt |
27444349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 27432383 - 27432298
Alignment:
| Q |
75 |
taagtgcatgtatacaaatgaaacatatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa |
160 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27432383 |
taagtgcatgtatacaaatgaaacgtatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa |
27432298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 27432433 - 27432405
Alignment:
| Q |
19 |
caaacaaaatatgccgtcttaattaattt |
47 |
Q |
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| T |
27432433 |
caaacaaaatatgccgtcttaattaattt |
27432405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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