View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_64 (Length: 205)
Name: NF20197_low_64
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 52952072 - 52952249
Alignment:
| Q |
11 |
gtagcataggcacaagtaaaactagaagtccataaccgctggattgaagaaaattgcgaaatcatctctcaggatgcaactatttttctattttgaaaag |
110 |
Q |
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| T |
52952072 |
gtagcataagcacaagtaaaactagaagtccataaccgctggattgaagaaaattgcgaaatcatctctcaggatgcaactatttttctattttgaaaag |
52952171 |
T |
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| Q |
111 |
atgatccgcaaatttatcgtgtattcttgtattgtttgtagcatcgaagaaaatcgaacattagatcttgatagtttt |
188 |
Q |
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| T |
52952172 |
atgatccgcaaatttatcgtgtattcttgtattgtttgtagcatcgaagagaatcgaacattagatcttgatagtttt |
52952249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 31923352 - 31923178
Alignment:
| Q |
11 |
gtagcataggcacaagtaaaactagaagtccataaccgctggattgaagaaaattgcgaaatcatctctcaggatgcaactatttttctattttgaaaag |
110 |
Q |
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| T |
31923352 |
gtagcataagcacaagtaaaactggaagtccataaccgctggattggagaaaattacg---tcatctctcaggatgcaactatttttctatttcgaaaag |
31923256 |
T |
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| Q |
111 |
atgatccgcaaatttatcgtgtattcttgtattgtttgtagcatcgaagaaaatcgaacattagatcttgatagtttt |
188 |
Q |
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| T |
31923255 |
atgatccgcaaatttatcgtgtattcttgtattgtttgtagcatcgaagagaatcgaacattagatcttgatagtttt |
31923178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 31905424 - 31905250
Alignment:
| Q |
11 |
gtagcataggcacaagtaaaactagaagtccataaccgctggattgaagaaaattgcgaaatcatctctcaggatgcaactatttttctattttgaaaag |
110 |
Q |
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| T |
31905424 |
gtagcataagcacaagtaaaactggaagtccataaccgctggattagagaaaattgcg---tcatctctcaggatgcaactatttttctattttgaaaag |
31905328 |
T |
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| Q |
111 |
atgatccgcaaatttatcgtgtattcttgtattgtttgtagcatcgaagaaaatcgaacattagatcttgatagtttt |
188 |
Q |
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| T |
31905327 |
atgatccgcaaatttattgtgtattcttgtattgtttgtagcatcgaagagaatcgaacattagatctcgatagtttt |
31905250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 31672287 - 31672459
Alignment:
| Q |
11 |
gtagcataggcacaagtaaaactagaagtccataaccgctggattgaagaaaattgcgaaatcatctctcaggatgcaactatttttctattttgaaaag |
110 |
Q |
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| T |
31672287 |
gtagcataagcacaagtaaaactggaagtccataaccgctggattggagaaaattacg---tcatctctcaggatgcaactatttttctattttgaaaag |
31672383 |
T |
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| Q |
111 |
atgatccgcaaatttatcgtgtattcttgtattgtttgtagcatcgaagaaaatcgaacattagatcttgatagtttt |
188 |
Q |
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| T |
31672384 |
atgatccgcaaatttattgtgtattct--tattggttgtagcatcgaagagaatcgaacattagatcttgatagtttt |
31672459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 3424482 - 3424560
Alignment:
| Q |
60 |
aaaattgcgaaatcatctctcaggatgcaactatttttctattttgaaaagatga-tccgcaaatttatcgtgtattct |
137 |
Q |
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| T |
3424482 |
aaaattgagatatcatctttcaggatgcaactattttgctattttaaaaaggtgattctgcaaatttaccgtgtattct |
3424560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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