View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20197_low_7 (Length: 449)
Name: NF20197_low_7
Description: NF20197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20197_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 42413753 - 42414141
Alignment:
| Q |
14 |
atatgttgagggaaaaaacaggcaaaccgcttggtccctgaagccacatcatcaagccacttgtccctaaaaagttgcataagctttttagattttaggg |
113 |
Q |
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| T |
42413753 |
atatgttgagggaaaaaacaggcaaaccacttggtccctgaagccacgtcatcaagccacttgcccctaaaaagtgacataagctttttagattttaggg |
42413852 |
T |
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| Q |
114 |
acgaaaatcactaacggattgaagagtcagagattgttttgtgttttcgtgtgtcctggattattgtgacagtgagttacactttcagggaccaaaatgg |
213 |
Q |
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| T |
42413853 |
acgaaaatcactaacggattgaagaatcagagattgttttgtgttttcgtgtgtcctggattattgtgacagtgagttacactttcagggaccaaaatgg |
42413952 |
T |
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| Q |
214 |
tggtctgcccgaactaaactcttggcctggaaattatagaaaagcaagatgattgtgtgaagttgtactgctaccagatttcttgacttgcttttcgatg |
313 |
Q |
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| T |
42413953 |
tggtctgcccgaactaaactcttggcctggaaattatagaaaagcaagatgattgtgtgaagttgtactgctaccagatttcttgacttgcttttcgatg |
42414052 |
T |
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| Q |
314 |
tttcttgtatatcagttagggagggttggattgttaatctatctagttaacagatgttatcacaattcataatatcaacattaaatgca |
402 |
Q |
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| T |
42414053 |
tttcttgtatatcagttagggagggttggattgttaatctatctagttaacagatgttatcacaattcacaatatcaacattaaatgca |
42414141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 432
Target Start/End: Original strand, 42415430 - 42415472
Alignment:
| Q |
390 |
aacattaaatgcagtttccatttaagaatgggtgatttgtaat |
432 |
Q |
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| T |
42415430 |
aacattaaatgcagtttccatttaagaatgggtgatttgtaat |
42415472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 32942066 - 32942107
Alignment:
| Q |
47 |
gtccctgaagccacatcatcaagccacttgtccctaaaaagt |
88 |
Q |
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| T |
32942066 |
gtccctgaagccacatcatcaagccatttttccttaaaaagt |
32942107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 14242834 - 14242870
Alignment:
| Q |
178 |
tgtgacagtgagttacactttcagggaccaaaatggt |
214 |
Q |
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| T |
14242834 |
tgtgacagcgagttacacttttagggaccaaaatggt |
14242870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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