View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20198_low_1 (Length: 743)
Name: NF20198_low_1
Description: NF20198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20198_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 706; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 18 - 727
Target Start/End: Complemental strand, 55739283 - 55738574
Alignment:
| Q |
18 |
cacagctatcccagcaaccttaagtggcagaccaactttgagcgtatcttgaatttcaatgtgaccagtagcaaaaccaactacatttgagggagttgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55739283 |
cacagctatcccagcaaccttaagtggcagaccaactttgagcgtatcttgaatttcaatgtgaccagtagcaaaaccaactacatttgagggagttgac |
55739184 |
T |
|
| Q |
118 |
gtaggaagcaagaaagcaaattcagtagcaattgctcctgggatcataagaagaagaggatgtacatgcatagtcctagctatatgatatagaagtggaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55739183 |
gtaggaagcaagaaagcaaattcagtagcaattgctcctgggatcataagaagaagaggatgtacatgcatagtcctagctatatgatatagaagtggaa |
55739084 |
T |
|
| Q |
218 |
taataagtgtagcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaattgccaaatatggggcatcttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55739083 |
taataagtgtagcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaattgccaaatatggggcatcttc |
55738984 |
T |
|
| Q |
318 |
taagaaatctaaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaattaggttccaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55738983 |
taagaaatctaaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaattaggttccaa |
55738884 |
T |
|
| Q |
418 |
ggtagtttcttgcattcattccaatccattagcctctcaccctcttgttttctgttcggtattatgaacaataatacagccaccataacctatattatga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55738883 |
ggtagtttcttgcattcattccaatccattagcctctcaccctcttgttttctgttcggtattatgaacaataatacagccaccataacctatattatga |
55738784 |
T |
|
| Q |
518 |
aaaaatgacaaagtttaattgattaacaaacatgacattagcactagtttgtaatatagattatgtctcaactcttaaacactagcacatatcggacacc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55738783 |
aaaaatgacaaagtttaattgattaacaaacatgacattagcactagtttgtaatatagattatgtctcaactcttaaacactagcacatatcggacacc |
55738684 |
T |
|
| Q |
618 |
agacaagacttcaatctgaagacaaaagagagatacatgtagtacttacactgacacttccatcaccaacaaggccatggaaaaaagttccccatccggg |
717 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55738683 |
agacacgacttcaatctgaagacaaaagagagatacatgtagtacttacactgacacttccatcaccaacaaggccatggaaaaaagttccccatccggg |
55738584 |
T |
|
| Q |
718 |
aatgtcatct |
727 |
Q |
| |
|
|||||||||| |
|
|
| T |
55738583 |
aatgtcatct |
55738574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 28 - 497
Target Start/End: Complemental strand, 9381260 - 9380791
Alignment:
| Q |
28 |
ccagcaaccttaagtggcagaccaactttgagcgtatcttgaatttcaatgtgaccagtagcaaaaccaactacatttgagggagttgacgtaggaagca |
127 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | |||| ||||||||| || ||||| ||||| ||||| |||||||| || ||||| || |||||| |
|
|
| T |
9381260 |
ccagcaaccttaagtggcacaccaactttaagcatgtctttaatttcaatatgtccagtggcaaatccaacaacatttgaaggtgttgatgttggaagcc |
9381161 |
T |
|
| Q |
128 |
agaaagcaaattcagtagcaattgctcctgggatcataagaagaagaggatgtacatgcatagtcctagctatatgatatagaagtggaataataagtgt |
227 |
Q |
| |
|
|||| ||||| ||||| || || | || ||||||||||||||||| ||||| ||||||||| | | ||||| ||||| | |||||||| || |||||| |
|
|
| T |
9381160 |
agaatgcaaactcagttgctataccaccagggatcataagaagaagtggatgaacatgcatatttatggctatgtgatacaaaagtggaacaagaagtgt |
9381061 |
T |
|
| Q |
228 |
agcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaattgccaaatatggggcatcttctaagaaatct |
327 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| ||||| |||| || |||||||| |||||| ||||||| || ||||| |||||| |||||| ||| |
|
|
| T |
9381060 |
ggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaattgctaagtatggaacatcttttaagaattct |
9380961 |
T |
|
| Q |
328 |
aaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaattaggttccaaggtagtttct |
427 |
Q |
| |
|
|| ||||| || | ||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||| || | ||||||||||||||| |||| || | |
|
|
| T |
9380960 |
aaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcctagaagcaaaattaggttccatggtaactttt |
9380861 |
T |
|
| Q |
428 |
tgcattcattccaatccattagcctctcaccctcttgttttctgttcggtattatgaacaataatacagc |
497 |
Q |
| |
|
||||||||||||| ||||||||| |||| || | ||| || |||| || |||||||| ||||| ||||| |
|
|
| T |
9380860 |
tgcattcattccagtccattagcttctccccattttgcttcatgtttgggattatgaataataagacagc |
9380791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 727
Target Start/End: Complemental strand, 9379735 - 9379668
Alignment:
| Q |
660 |
tacttacactgacacttccatcaccaacaaggccatggaaaaaagttccccatccgggaatgtcatct |
727 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||| || | ||||||| |
|
|
| T |
9379735 |
tacttacactgatgcttccatcaccaacaaggccatggaacaaaactccccatccaggtaagtcatct |
9379668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University