View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20198_low_10 (Length: 206)

Name: NF20198_low_10
Description: NF20198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20198_low_10
NF20198_low_10
[»] chr4 (10 HSPs)
chr4 (131-190)||(45989621-45989680)
chr4 (131-190)||(42069057-42069116)
chr4 (131-190)||(47031470-47031529)
chr4 (131-188)||(42976479-42976536)
chr4 (131-186)||(27293097-27293152)
chr4 (131-189)||(15531222-15531280)
chr4 (131-189)||(20133417-20133475)
chr4 (131-188)||(28679516-28679573)
chr4 (131-189)||(55919398-55919456)
chr4 (11-39)||(47031350-47031378)
[»] chr7 (9 HSPs)
chr7 (131-190)||(6442632-6442691)
chr7 (131-190)||(34094113-34094172)
chr7 (131-189)||(45972430-45972488)
chr7 (8-39)||(6442783-6442814)
chr7 (143-186)||(19436823-19436866)
chr7 (131-189)||(29243387-29243443)
chr7 (143-186)||(29833968-29834011)
chr7 (8-39)||(34094266-34094297)
chr7 (131-189)||(47327949-47328007)
[»] chr1 (7 HSPs)
chr1 (131-190)||(45325646-45325705)
chr1 (131-189)||(12981528-12981586)
chr1 (131-185)||(27286316-27286370)
chr1 (131-189)||(45348279-45348337)
chr1 (8-39)||(45325523-45325554)
chr1 (131-186)||(52385825-52385880)
chr1 (131-189)||(39241706-39241761)
[»] chr3 (9 HSPs)
chr3 (131-188)||(31658831-31658888)
chr3 (141-189)||(36950179-36950227)
chr3 (131-186)||(50650403-50650458)
chr3 (131-189)||(29703547-29703605)
chr3 (131-189)||(39833242-39833300)
chr3 (131-189)||(20104329-20104387)
chr3 (131-185)||(53282305-53282359)
chr3 (143-186)||(12938552-12938595)
chr3 (131-189)||(5232953-5233011)
[»] chr2 (9 HSPs)
chr2 (131-189)||(18977122-18977180)
chr2 (131-189)||(14810126-14810184)
chr2 (131-189)||(15330742-15330800)
chr2 (131-189)||(37261708-37261766)
chr2 (131-188)||(17690612-17690669)
chr2 (141-189)||(7089232-7089280)
chr2 (131-189)||(16429871-16429929)
chr2 (141-189)||(33755091-33755139)
chr2 (131-189)||(37078954-37079012)
[»] chr8 (4 HSPs)
chr8 (141-189)||(3879488-3879536)
chr8 (131-182)||(531698-531749)
chr8 (131-189)||(30945464-30945520)
chr8 (131-188)||(13802691-13802748)
[»] chr6 (3 HSPs)
chr6 (131-185)||(12938794-12938848)
chr6 (143-189)||(28138063-28138109)
chr6 (132-189)||(33694928-33694985)
[»] chr5 (7 HSPs)
chr5 (131-189)||(39884703-39884761)
chr5 (131-188)||(24788335-24788392)
chr5 (131-182)||(30625019-30625070)
chr5 (131-189)||(31482080-31482138)
chr5 (143-186)||(1828563-1828606)
chr5 (143-186)||(40314028-40314071)
chr5 (143-186)||(41413466-41413509)
[»] scaffold0166 (1 HSPs)
scaffold0166 (131-188)||(30718-30775)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 45989621 - 45989680
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatgt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45989621 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatgt 45989680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 42069057 - 42069116
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatgt 190  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42069057 gtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatcatgt 42069116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 47031470 - 47031529
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatgt 190  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  47031470 gtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatcatgt 47031529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 42976536 - 42976479
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcat 188  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  42976536 gtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcat 42976479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 27293152 - 27293097
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||||||||||||    
T  27293152 gtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 27293097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 15531222 - 15531280
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  15531222 gtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatg 15531280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 20133475 - 20133417
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  20133475 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatg 20133417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 28679573 - 28679516
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcat 188  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||    
T  28679573 gtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcat 28679516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 55919398 - 55919456
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||  |||| ||||||    
T  55919398 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatg 55919456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 47031350 - 47031378
Alignment:
Q  11 gaatatgatgaagatgttgaagagtgatt 39  Q
    |||||||||||||||||||||||||||||    
T  47031350 gaatatgatgaagatgttgaagagtgatt 47031378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 6442691 - 6442632
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatgt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6442691 gtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatcatgt 6442632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 34094172 - 34094113
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatgt 190  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  34094172 gtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagattatgt 34094113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 45972488 - 45972430
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  45972488 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatg 45972430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 6442814 - 6442783
Alignment:
Q  8 gatgaatatgatgaagatgttgaagagtgatt 39  Q
    ||||||||||||||||||||||||||||||||    
T  6442814 gatgaatatgatgaagatgttgaagagtgatt 6442783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 19436866 - 19436823
Alignment:
Q  143 taccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    |||||||||||||||||||||||  ||||||||| |||||||||    
T  19436866 taccacaataacatagagaccaaacaaatctaactgttaagatc 19436823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 29243443 - 29243387
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| |||||||||||  |||||| ||| ||||||||||| |||||||||||    
T  29243443 gtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatg 29243387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 29833968 - 29834011
Alignment:
Q  143 taccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    |||||||||||||||||||||||  ||||||||| |||||||||    
T  29833968 taccacaataacatagagaccaaacaaatctaactgttaagatc 29834011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 34094297 - 34094266
Alignment:
Q  8 gatgaatatgatgaagatgttgaagagtgatt 39  Q
    ||||||||||||||||||||||||||||||||    
T  34094297 gatgaatatgatgaagatgttgaagagtgatt 34094266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 47328007 - 47327949
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||| | ||||||||||||||| ||| ||| ||||||||||  |||||||||||    
T  47328007 gtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatg 47327949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 45325646 - 45325705
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatgt 190  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45325646 gtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatcatgt 45325705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 12981586 - 12981528
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  12981586 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatg 12981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 27286370 - 27286316
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagat 185  Q
    ||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||    
T  27286370 gtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagat 27286316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 45348279 - 45348337
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  45348279 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatg 45348337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 45325523 - 45325554
Alignment:
Q  8 gatgaatatgatgaagatgttgaagagtgatt 39  Q
    ||||||||||||||||||||||||||||||||    
T  45325523 gatgaatatgatgaagatgttgaagagtgatt 45325554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 52385825 - 52385880
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    ||||||| ||| ||||||||||||||||||| |||  |||||||||||| ||||||    
T  52385825 gtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatc 52385880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 39241761 - 39241706
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||| |||   ||  |||||||||||||||||||||||    
T  39241761 gtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatg 39241706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 31658831 - 31658888
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcat 188  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  31658831 gtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcat 31658888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 36950179 - 36950227
Alignment:
Q  141 tataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  36950179 tataccacaataacatagagaccaagtaaatctaaccattaagatcatg 36950227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 50650403 - 50650458
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||||||||||||    
T  50650403 gtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 50650458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 29703547 - 29703605
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  29703547 gtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatg 29703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 39833242 - 39833300
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  39833242 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatg 39833300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 20104387 - 20104329
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||| | ||||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  20104387 gtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatg 20104329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 53282359 - 53282305
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagat 185  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||| |||||||    
T  53282359 gtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagat 53282305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 12938595 - 12938552
Alignment:
Q  143 taccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||    
T  12938595 taccacaataacatagacaccaagtaaacctaaccgttaagatc 12938552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 5233011 - 5232953
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||| | ||||||||||||||| ||| ||| ||||||||||  |||||||||||    
T  5233011 gtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatg 5232953  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 18977122 - 18977180
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||    
T  18977122 gtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatg 18977180  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 14810126 - 14810184
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  14810126 gtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatg 14810184  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 15330800 - 15330742
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  15330800 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatg 15330742  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 37261708 - 37261766
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  37261708 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatg 37261766  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 17690669 - 17690612
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcat 188  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  17690669 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 17690612  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 7089280 - 7089232
Alignment:
Q  141 tataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  7089280 tataccacaataacatagagatcaagtaaatctaaccattaagatcatg 7089232  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 16429929 - 16429871
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||| ||||||||||||| ||| ||||||||||| |||| ||||||    
T  16429929 gtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatg 16429871  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 33755091 - 33755139
Alignment:
Q  141 tataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||||||||| ||||||| ||||||||||| |||| ||||||    
T  33755091 tataccacaataacatatagaccaagtaaatctaaccattaatatcatg 33755139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 37079012 - 37078954
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||| | ||||||||||||||| ||| ||| ||||||||||  |||||||||||    
T  37079012 gtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatg 37078954  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 3879488 - 3879536
Alignment:
Q  141 tataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  3879488 tataccacaataacatagagaccaagtaaatctaaccattaagatcatg 3879536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 531749 - 531698
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaa 182  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  531749 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaa 531698  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 30945464 - 30945520
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| |||||||||||  |||||| ||| ||||||||||| |||||||||||    
T  30945464 gtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatg 30945520  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 13802691 - 13802748
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcat 188  Q
    ||||||||||| ||||| ||||  |||||||||||  |||||||||| ||||||||||    
T  13802691 gtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcat 13802748  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 12938848 - 12938794
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagat 185  Q
    ||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||    
T  12938848 gtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagat 12938794  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 28138063 - 28138109
Alignment:
Q  143 taccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  28138063 taccacaataatatagagaccaagtaaatctaacctttaagatcatg 28138109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 33694985 - 33694928
Alignment:
Q  132 tgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    |||||| ||| ||||||||||| |||||| |||| |||||||||| ||||||||||||    
T  33694985 tgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatg 33694928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 39884761 - 39884703
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  39884761 gtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatg 39884703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 24788335 - 24788392
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcat 188  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  24788335 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 24788392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 30625070 - 30625019
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaa 182  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||||||||    
T  30625070 gtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaa 30625019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 31482080 - 31482138
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 189  Q
    ||||||||||| ||||| |||| ||||||||||||  |||||||||| |||||||||||    
T  31482080 gtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatg 31482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 1828606 - 1828563
Alignment:
Q  143 taccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||    
T  1828606 taccacaataacatagacaccaagtaaacctaaccgttaagatc 1828563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 40314071 - 40314028
Alignment:
Q  143 taccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||    
T  40314071 taccacaataacatagacaccaagtaaacctaaccgttaagatc 40314028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 41413466 - 41413509
Alignment:
Q  143 taccacaataacatagagaccaattaaatctaaccgttaagatc 186  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||    
T  41413466 taccacaataacatagacaccaagtaaacctaaccgttaagatc 41413509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 30718 - 30775
Alignment:
Q  131 gtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcat 188  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  30718 gtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 30775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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