View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20198_low_3 (Length: 529)
Name: NF20198_low_3
Description: NF20198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20198_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 32393001 - 32393455
Alignment:
| Q |
13 |
aaggcttaagacaacaatatgtactagcatatcatttgttgagataattcttacttcattcatatnnnnnnnttgtattttgtatactgtataatttgta |
112 |
Q |
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| T |
32393001 |
aaggcttaagacaacaatatgtactagcatatcatttgttgagataattcttacttcattcatgtaaaaaaattgtattgtggatactgtataatttgta |
32393100 |
T |
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| Q |
113 |
ggttgagaaaatcaataaaataatttacccttt-atttaacaatcaacagatcaggtgctgactgctgaacaatttttcttatatttacctgtttattta |
211 |
Q |
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| T |
32393101 |
ggttgagaaaatcaataaaataatttacccttttatttaacaatcaacggatcaggtgctgactgctgaacaatttttcttatatttacctgtttattta |
32393200 |
T |
|
| Q |
212 |
ttgccaactatgattgcacttttactcgatgatagtagccatagtattgtttttaatgaaatgtggaaaatggaaggacatgttgagatggtgcagtatc |
311 |
Q |
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| T |
32393201 |
ttgccaactatgattgcacttttacttgatgatagtagccatagtattgtttttcatgaaatgtggaaaatggaaggacatgttgagatggtccagtatc |
32393300 |
T |
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| Q |
312 |
tttatgctagcacatgttggagcttgtaatcagttatgtgattgagttctgatatatgatattacttgtatcaactcttggtgggtgatgtgtagcacta |
411 |
Q |
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| T |
32393301 |
tttatgctagcacatgttggagcttgtaatcagttatgtgattgagttctgatatatgatattacttgtatcaactcttggtgggtgatgtgtagcacta |
32393400 |
T |
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| Q |
412 |
aatagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcat |
467 |
Q |
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| T |
32393401 |
aatagcaatcttcaagctgacc-aattaattgttggcaagaaatatgcttattcat |
32393455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 512
Target Start/End: Original strand, 32393745 - 32393789
Alignment:
| Q |
469 |
taactattaactatctggctatgcggg-cccctgagagccatgat |
512 |
Q |
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| T |
32393745 |
taactatcaactatctggctatgcgggccccctgagagccatgat |
32393789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 512
Target Start/End: Original strand, 26162230 - 26162723
Alignment:
| Q |
15 |
ggcttaagacaacaatatgtactagcatatcatttgttgagataattcttacttcattcatatnnnnnnnttgtattttgtatactgtataatttgtagg |
114 |
Q |
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| T |
26162230 |
ggcttaagacaacaatatgtactagcatatcatttgttcagatgattcttacttcattcatgtaaaaaact---attgtggatactgtataatttgtagg |
26162326 |
T |
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| Q |
115 |
ttgagaaaatcaataaaataatttaccctttatttaacaatcaacagatcaggtgctgactgctgaacaatttttcttatatttacctgtttatttattg |
214 |
Q |
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| T |
26162327 |
ttgagaaaatcaataaa-taatttacccttaatttaacaatcagtggatcaggtgctgactgctgaacaatttttcttatatttacttgtttatttattg |
26162425 |
T |
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| Q |
215 |
ccaactatgattgcacttttactcgatgatagtagccatagtattgtttttaatgaaatgtggaaaatggaaggacatgttgagatggtgcagtatcttt |
314 |
Q |
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||||||||||||||||||| ||| |||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
26162426 |
ccaactatgattgcactttcacttgatgatgatagccatattattgcttttcatgaaatgtggaaaatggaaggacatgttcagatgggacagtatcttt |
26162525 |
T |
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| Q |
315 |
atgctagcacatgttggagc-ttgtaatcagttatgtgattgagttctgatatatgatattacttgtatcaactcttggtgggtgatgtgtagcactaaa |
413 |
Q |
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| T |
26162526 |
ctgctaccacatgttggatctttgtaatcagttatgtaattgaattctaatatatgatattacttgtactagctcttggtgggtgatgtgtaacactaaa |
26162625 |
T |
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| Q |
414 |
tagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcatctaactattaactatctggctatgcgggcccctgagagccatgat |
512 |
Q |
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| T |
26162626 |
tagcaatcttcaagatgacc-aattaattgttggcaggaaatatgtttatccatctaactatcaacaatctggctatgtgggatcctgagagccatgat |
26162723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 33605941 - 33606069
Alignment:
| Q |
185 |
tttttcttatatttacctgtttatttattgccaactatgattgcacttttact---cgatgatagtagccatagtattgtttttaatgaaatgtggaaaa |
281 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||| | | |||||| |||| ||||| |||| || | |||||||||||||| |
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| T |
33605941 |
tttttcttatatttacctttttatttattgtcaactatgattgcactttcaattaatgatgatggtagtcatagaattgcttctcatgaaatgtggaaac |
33606040 |
T |
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| Q |
282 |
tggaaggacatgttgagatggtgcagtat |
310 |
Q |
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| T |
33606041 |
tggaaagacatgttaagatggtgcagtat |
33606069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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