View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20198_low_5 (Length: 456)
Name: NF20198_low_5
Description: NF20198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20198_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 224 - 439
Target Start/End: Complemental strand, 43233893 - 43233654
Alignment:
| Q |
224 |
gacatcaaataggtctatatatat--gcctaaacaaccgaattaaaaatgcaaaaatatatttgaacacacattattctccaacattcatttaacacgtc |
321 |
Q |
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| T |
43233893 |
gacatcaaataggtctatatatatatgcctaaacaaccgaattaaaaatgcaaaaatatatttgaacacacattattctccaatattcatttaacacgtc |
43233794 |
T |
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| Q |
322 |
attttatatata----------------------acatctattataccactattcatatgtttctctctcctagatcaaggtatatatgtaatatgagaa |
399 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
43233793 |
attttatatatagttgtttcttatgtgatctataacatctattataccactattcatatttttctttctcctagatcaaggtatatatgtaatatgagaa |
43233694 |
T |
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| Q |
400 |
acgtttttcttagaaaagatctgacttattttctattcat |
439 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
43233693 |
acgtttttcttagaaaaggtctgacttattttctattcat |
43233654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 43234114 - 43234016
Alignment:
| Q |
1 |
gcaccaattaaagtctagctcgttgcctcaaaaaccatatcattatatataccaaagcagatatcagataaactataagccgattaaatttggattgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43234114 |
gcaccaattaaagtctagctcgttgcctcaaaaaccat--cattatatataccaaagcagatatcagataaactgtaagccgattaaatttggattgttt |
43234017 |
T |
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