View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20198_low_8 (Length: 316)

Name: NF20198_low_8
Description: NF20198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20198_low_8
NF20198_low_8
[»] chr1 (20 HSPs)
chr1 (1-299)||(28231435-28231750)
chr1 (74-265)||(28239042-28239233)
chr1 (102-248)||(47569149-47569295)
chr1 (102-248)||(14508763-14508906)
chr1 (102-252)||(677199-677349)
chr1 (102-244)||(6326702-6326844)
chr1 (71-236)||(28326317-28326485)
chr1 (1-67)||(28239377-28239443)
chr1 (102-145)||(4872625-4872668)
chr1 (174-237)||(21159167-21159230)
chr1 (1-59)||(28326517-28326575)
chr1 (186-248)||(671025-671087)
chr1 (107-263)||(23787015-23787168)
chr1 (165-244)||(2289006-2289082)
chr1 (206-263)||(24621795-24621852)
chr1 (4-64)||(24621605-24621665)
chr1 (102-144)||(12535425-12535467)
chr1 (207-248)||(4251618-4251659)
chr1 (4-64)||(23787210-23787270)
chr1 (2-58)||(47569320-47569376)
[»] chr5 (1 HSPs)
chr5 (102-248)||(1717879-1718022)
[»] chr3 (1 HSPs)
chr3 (103-260)||(47924865-47925019)
[»] chr7 (1 HSPs)
chr7 (2-47)||(3698138-3698183)
[»] chr2 (3 HSPs)
chr2 (69-145)||(9066378-9066454)
chr2 (185-248)||(9066272-9066335)
chr2 (104-145)||(9068561-9068602)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 28231750 - 28231435
Alignment:
Q  1 caccttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaactaaagtagg-----------------tttttgatgcctcgaa 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||    
T  28231750 caccttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaactaaagtaggatgggttggagacaaggtttttgatgcctcgaa 28231651  T
Q  84 ttcaataaagaagcgaagtgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaaca 183  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  28231650 ttcaataaagaagcgaagtgcttctttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaaccaggcttgatgttgttaaca 28231551  T
Q  184 taaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataacaccacatgaaattagaaatgc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28231550 taaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataacaccacatgaaattagaaatgc 28231451  T
Q  284 gatattttggtttctt 299  Q
    ||||||||||||||||    
T  28231450 gatattttggtttctt 28231435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 28239233 - 28239042
Alignment:
Q  74 atgcctcgaattcaataaagaagcgaagtgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgat 173  Q
    ||||||| ||||| |||||||||  || ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||  | ||| |||  ||||    
T  28239233 atgcctccaattctataaagaagtcaattgcctgtttaaattgaccgaggatgcaataaccatagactagatgactatatgtgcaagaatcagggctgat 28239134  T
Q  174 gttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataacacc 265  Q
    ||||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||| |||| ||| ||||||||||||    
T  28239133 gttgttaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgatttaattataacacc 28239042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 47569295 - 47569149
Alignment:
Q  102 tgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatat 201  Q
    ||||||||| |||||||| |||||||||||||||||| |||||| |  |||||||  | ||| ||||| |||||||||||| | ||||||||||||||||    
T  47569295 tgcttgtttgaattgacccaggatgcaataaccataggttagattttgatatgtggtataattaggctcgatgttgttaacgtgaatcatttcagaatat 47569196  T
Q  202 aattcataggcttggttaacaagtctatctttgcagagtctgaatat 248  Q
    || |||||||||||||| |||||||||||||||||||||||||||||    
T  47569195 aaatcataggcttggtttacaagtctatctttgcagagtctgaatat 47569149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 14508763 - 14508906
Alignment:
Q  102 tgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatat 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||    |||||||  |  || ||| ||||| || ||||||   |||||||||||||||    
T  14508763 tgcttgtttaaattgaccgacgatgcaataaccatagattagattatgatatgtgatagcatcaggattgatcttcttaaca---atcatttcagaatat 14508859  T
Q  202 aattcataggcttggttaacaagtctatctttgcagagtctgaatat 248  Q
    || |||||||||||||| ||| ||||||||||||| |||||||||||    
T  14508860 aaatcataggcttggtttacacgtctatctttgcatagtctgaatat 14508906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 677349 - 677199
Alignment:
Q  102 tgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatat 201  Q
    |||||||||||| ||| | |  |||||||| |||||||  ||||| | || ||||||| ||| ||| ||||| ||| |||||| ||||||||||||||||    
T  677349 tgcttgtttaaactgatcaacaatgcaatagccatagaggagatggcaatgtgtgtgaaaatcagggttgattttggtaacatgaatcatttcagaatat 677250  T
Q  202 aattcataggcttggttaacaagtctatctttgcagagtctgaatataatt 252  Q
    || ||||||||||| |  ||||||||||||||||||||||| |||||||||    
T  677249 aaatcataggcttgatgtacaagtctatctttgcagagtctaaatataatt 677199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 6326702 - 6326844
Alignment:
Q  102 tgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatat 201  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||    || |||  |  || |||||||| | ||| |  || ||||||||||||||||    
T  6326702 tgcttgttcaaattgaccgaggatgcaatagccatagattagatgatggtaagtgacaacatcaggcttgaaggtgtgagtatgaatcatttcagaatat 6326801  T
Q  202 aattcataggcttggttaacaagtctatctttgcagagtctga 244  Q
    || ||||||||||||||  ||||||||||||||||||||||||    
T  6326802 aaatcataggcttggtttgcaagtctatctttgcagagtctga 6326844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 28326485 - 28326317
Alignment:
Q  71 ttgatgcctcgaattcaataaagaagcgaagtgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggctt 170  Q
    ||||||||| ||| ||  |||| || |||| |||||||||||||||||||| ||| ||||| ||| ||||||||||   |||||||||| ||| |||       
T  28326485 ttgatgccttgaactctttaaataaacgaattgcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtgtgagaattaggtga 28326386  T
Q  171 gatgttgttaacataaa---tcatttcagaatataattcataggcttggttaacaagtctatctttgca 236  Q
    ||  |||||| ||| ||   |||||||||||||||| ||||| |||||||| | |||||||||||||||    
T  28326385 gacattgttaccatgaagcttcatttcagaatataaatcataagcttggtttataagtctatctttgca 28326317  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28239443 - 28239377
Alignment:
Q  1 caccttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaactaaagtagg 67  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| |||| ||||||||||||||||||    
T  28239443 caccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaagtagg 28239377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 4872668 - 4872625
Alignment:
Q  102 tgcttgtttaaattgaccgaggatgcaataaccatagattagat 145  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  4872668 tgcttgtttaaattgaccgaggatgcaatagccatagattagat 4872625  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 21159167 - 21159230
Alignment:
Q  174 gttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcag 237  Q
    ||||||||||| ||  |||||||||||||| |||||||||||||| | ||||||||||||||||    
T  21159167 gttgttaacatgaagaatttcagaatataaatcataggcttggtttataagtctatctttgcag 21159230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28326575 - 28326517
Alignment:
Q  1 caccttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaact 59  Q
    ||||||||||||| | |||| ||||||||||||||||| ||||||||| ||||||||||    
T  28326575 caccttttatcatgacagctactacacttttagcagatttcacctctctttcggtaact 28326517  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 671025 - 671087
Alignment:
Q  186 aatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatat 248  Q
    |||||||||| |||||||  ||||| ||||||| ||||||||||||||||| || ||||||||    
T  671025 aatcatttcaaaatataaaccatagccttggtttacaagtctatctttgcacagcctgaatat 671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 263
Target Start/End: Complemental strand, 23787168 - 23787015
Alignment:
Q  107 gtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatataattc 206  Q
    ||||||| ||||||| ||||||||||||||||||||||| |  ||||||   |   | | ||  |||||||||||   |||||||||||  ||| |   |    
T  23787168 gtttaaagtgaccgatgatgcaataaccatagattagatttgcatatgttatagggttaagcaagatgttgttaa---aaatcatttcaacataaagagc 23787072  T
Q  207 ataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataaca 263  Q
    |||||||||||| |||||||| |||||| |||| |||||||| ||||| ||||||||    
T  23787071 ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 23787015  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 2289006 - 2289082
Alignment:
Q  165 aggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctga 244  Q
    |||| ||||||||||||||   ||||||| ||||||||| |||||||||||| | ||||||||||| |||| ||| ||||    
T  2289006 aggcatgatgttgttaaca---atcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctga 2289082  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 24621795 - 24621852
Alignment:
Q  206 cataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataaca 263  Q
    ||||||||||||| |||||||| |||||| |||| |||||||| ||||| ||||||||    
T  24621795 cataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 24621852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 24621605 - 24621665
Alignment:
Q  4 cttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaactaaagt 64  Q
    |||||||||||| || |||| |||||||| ||||| ||||||||  |||||||||||||||    
T  24621605 cttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaagt 24621665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 12535425 - 12535467
Alignment:
Q  102 tgcttgtttaaattgaccgaggatgcaataaccatagattaga 144  Q
    |||||||||||||||||||  ||||||||| ||||||||||||    
T  12535425 tgcttgtttaaattgaccggtgatgcaatagccatagattaga 12535467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 4251618 - 4251659
Alignment:
Q  207 ataggcttggttaacaagtctatctttgcagagtctgaatat 248  Q
    |||||||||||| |||||||||||||||||||| ||| ||||    
T  4251618 ataggcttggtttacaagtctatctttgcagagcctggatat 4251659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 23787270 - 23787210
Alignment:
Q  4 cttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaactaaagt 64  Q
    ||||||||| || || |||| |||||||| ||||| ||||||||  |||||||||||||||    
T  23787270 cttttatcaccaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaagt 23787210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 47569376 - 47569320
Alignment:
Q  2 accttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaac 58  Q
    |||||||||||||| ||| ||| ||| |||||||||| ||||||||  |||||||||    
T  47569376 accttttatcatcaaagcagctgcacatttagcagatttcacctcttgttcggtaac 47569320  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 1718022 - 1717879
Alignment:
Q  102 tgcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatat 201  Q
    |||||||||||||||||| | |||||||||||||||||||||||    |||||||  |  |  |||  ||||||| || |||   |||||||||||||||    
T  1718022 tgcttgtttaaattgaccaacgatgcaataaccatagattagattatgatatgtgacaacacaaggggtgatgttctttaca---atcatttcagaatat 1717926  T
Q  202 aattcataggcttggttaacaagtctatctttgcagagtctgaatat 248  Q
    || |||||||||||||| ||||||||||||||||| |||||||||||    
T  1717925 aaatcataggcttggtttacaagtctatctttgcatagtctgaatat 1717879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 47924865 - 47925019
Alignment:
Q  103 gcttgtttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatata 202  Q
    ||||||||||||| ||||| ||||||||| |||| ||||||||    ||||||| |||||  | |    ||||| ||||||   |||||||||||||| |    
T  47924865 gcttgtttaaattcaccgatgatgcaatagccattgattagataatgatatgtgagacaacaacggggtatgttcttaaca---atcatttcagaataga 47924961  T
Q  203 attcataggcttggttaacaagtctatctttgcagagtctgaatataattgaattata 260  Q
    | ||||||||||| || || |||||||||||||||||  ||| ||| ||||| |||||    
T  47924962 agtcataggcttgatttactagtctatctttgcagagggtgagtatgattgagttata 47925019  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 3698138 - 3698183
Alignment:
Q  2 accttttatcatcatagctgctacacttttagcagatctcacctct 47  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||    
T  3698138 accttttatcgtcatagctgctacatttttagcagatttcacctct 3698183  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 9066454 - 9066378
Alignment:
Q  69 ttttgatgcctcgaattcaataaagaagcgaagtgcttgtttaaattgaccgaggatgcaataaccatagattagat 145  Q
    |||| ||||||| |||||  |||| |||  || |||| ||||||||||||||| ||| |||||||||||||||||||    
T  9066454 ttttaatgcctctaattctctaaacaaggcaattgctggtttaaattgaccgacgatacaataaccatagattagat 9066378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 9066335 - 9066272
Alignment:
Q  185 aaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatat 248  Q
    |||||||||  |||||||| |||||||||||||| ||| ||||| |||| || |||||||||||    
T  9066335 aaatcatttgtgaatataaatcataggcttggtttacaggtctacctttacatagtctgaatat 9066272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 9068602 - 9068561
Alignment:
Q  104 cttgtttaaattgaccgaggatgcaataaccatagattagat 145  Q
    |||||||||||||||| | ||||||||| |||||||||||||    
T  9068602 cttgtttaaattgaccaacgatgcaatagccatagattagat 9068561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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