View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20199_low_1 (Length: 607)
Name: NF20199_low_1
Description: NF20199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20199_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 41777191 - 41776587
Alignment:
| Q |
1 |
gaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaatcaaaatccttgt |
100 |
Q |
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| T |
41777191 |
gaacctcttgagtaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaatcaaaatccttgt |
41777092 |
T |
|
| Q |
101 |
aagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtgtgtaggcataatctaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41777091 |
aagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtgtgtaggcataatctaatg |
41776992 |
T |
|
| Q |
201 |
cagtcacgcagtcagccacatcagtggcaattggttaagatcgaacagtccagataaaataccaagcttgacgtccattcttgattcaatggccaccgat |
300 |
Q |
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| T |
41776991 |
cagtcacgcagtcagccacattggtggcaattggttaagatcgaacagtccagataaaataccaagcttgacgtccattcttgattcaatggccaccaat |
41776892 |
T |
|
| Q |
301 |
gtagataggtgcgtg----------------actgcacaaaatccaatccgcatgtgaaagggtatgtctatatgtactgtacctgagggatgacaccga |
384 |
Q |
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|||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
41776891 |
gtagctaggtgcgtgactgtatgggactgtgactgcacaaaatccaatccacatgtgaaagggtatgtctatatatactgtacttgagggatgacaccga |
41776792 |
T |
|
| Q |
385 |
tctcaatgagaagagggcccagaatgaatccacctccagaaccaagtagccctccaacggtcccacctaagattccacagagcgcacaaaacacaatgtg |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41776791 |
tctcaatgagaagagggcccagaatgaatccacctccagaaccaagtagccctccaacggtcccacctaagattccacagagcgcacaaaacacaatgtg |
41776692 |
T |
|
| Q |
485 |
caacacagtccattcaattgaagcttcacatatacattccaggtttcctgtattcatcctcttcttgtaatccttgtacaatttcattgcttcataccaa |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41776691 |
caacacagtccattcaattgaagcttcacatatacattccaggtttcctgtattcatcctcttcttgtaatccttgtacaatttcattgcttcataccaa |
41776592 |
T |
|
| Q |
585 |
aatac |
589 |
Q |
| |
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||||| |
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| T |
41776591 |
aatac |
41776587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 41308348 - 41308303
Alignment:
| Q |
178 |
ttgtgtgtaggcataatctaatgcagtcacgcagtcagccacatca |
223 |
Q |
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| T |
41308348 |
ttgtatgtagtcacaatctgatgcagtcacgcagtcagccacatca |
41308303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26956955 - 26957042
Alignment:
| Q |
1 |
gaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaat |
88 |
Q |
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|||||||||||| | |||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
26956955 |
gaacctcttgagaatgtagaactcaaaaacagacaaagatgatgaaaacatcatcacaaatgttgctgttgcactagcaacctacaat |
26957042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 26957512 - 26957584
Alignment:
| Q |
370 |
gagggatgacaccgatctcaatgagaagagggcccagaatgaatccacctccagaaccaagtagccctccaac |
442 |
Q |
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||||||||||||| ||||||| ||||||||| |||| ||| |||||||||||||||||||||| |||||||| |
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| T |
26957512 |
gagggatgacacctatctcaaggagaagaggccccaaaataaatccacctccagaaccaagtaagcctccaac |
26957584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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