View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20199_low_2 (Length: 563)

Name: NF20199_low_2
Description: NF20199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20199_low_2
NF20199_low_2
[»] chr5 (10 HSPs)
chr5 (14-546)||(13447062-13447596)
chr5 (14-336)||(13419511-13419833)
chr5 (14-281)||(13426402-13426669)
chr5 (16-293)||(13413168-13413445)
chr5 (16-262)||(13388988-13389234)
chr5 (141-262)||(13385167-13385288)
chr5 (142-262)||(13454143-13454263)
chr5 (14-88)||(13454015-13454089)
chr5 (16-95)||(13393562-13393641)
chr5 (180-254)||(13393403-13393477)
[»] chr4 (2 HSPs)
chr4 (34-108)||(47601353-47601427)
chr4 (211-251)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Original strand, 13447062 - 13447596
Alignment:
Q  14 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447062 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 13447161  T
Q  114 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13447162 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctact 13447261  T
Q  214 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13447262 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgag 13447361  T
Q  314 caattattttctactcgtttcttttgattgactcagtctactagttatcatagtaagtataaaataa-ttgataaagtaaaggtataactc--aaaatat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  13447362 caattattttctactcgtttcttttgattgactcagtctactagttatcatagtaagtataaaataatttgataaagtaaaggtataactcaaaaaatat 13447461  T
Q  411 ttgtttttacttaaaatatgacaattaaaaagaaacaatagaataaactataatagaaattaaaggtgttgaaaacataccccgggaccaatggataggt 510  Q
    ||| ||||||||||||| |||||||||||||||||  |  |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  13447462 ttg-ttttacttaaaatgtgacaattaaaaagaaatgacggaataaactataatagaagttaaaggtgttgaaaacataccccgggactaatggataggt 13447560  T
Q  511 ggttttgccccattcattctgcataatgtgaaggtc 546  Q
    ||||||||||||||||||||||||||||||||||||    
T  13447561 ggttttgccccattcattctgcataatgtgaaggtc 13447596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 13419511 - 13419833
Alignment:
Q  14 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| ||||    
T  13419511 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactt 13419610  T
Q  114 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 213  Q
      ||    ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||    
T  13419611 tgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaact 13419710  T
Q  214 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 313  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| |||||  |||||||| || | |||||| ||||||||     
T  13419711 ttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaa 13419810  T
Q  314 caattattttctactcgtttctt 336  Q
    ||||||||| |||||| ||||||    
T  13419811 caattatttactactcatttctt 13419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 13426402 - 13426669
Alignment:
Q  14 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||||||||| ||||    
T  13426402 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatactt 13426501  T
Q  114 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 213  Q
    | ||    ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  13426502 agcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctact 13426601  T
Q  214 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcct 281  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||    
T  13426602 ttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct 13426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 13413168 - 13413445
Alignment:
Q  16 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac 115  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||||||||| ||||      
T  13413168 tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttgg 13413267  T
Q  116 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 215  Q
    ||    ||||      | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || ||||||||    
T  13413268 caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctacttt 13413367  T
Q  216 gtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca 293  Q
    |||||||||||||||||| |  ||||||||||| || |||||||||| ||||| ||| || ||||| |||||||||||    
T  13413368 gtctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca 13413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 13389234 - 13388988
Alignment:
Q  16 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac 115  Q
    ||||| ||||| | |||||||||| ||| ||| |||| ||| |||||||||| |||||| ||  |||||||||| ||| | || ||||| ||| ||||      
T  13389234 tcaagtggtaatccatcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttgg 13389135  T
Q  116 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 215  Q
    ||    ||||   |||| || |||  |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||    
T  13389134 caccacatgtgaaagtaaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctacttt 13389035  T
Q  216 gtctccaactttaaacttttttactttgcttcccacctctgttacta 262  Q
    ||||||||| || ||||||| ||||||||||||||||| ||| ||||    
T  13389034 gtctccaacattgaacttttctactttgcttcccacctttgtcacta 13388988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
Q  141 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 240  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  241 ttgcttcccacctctgttacta 262  Q
    ||||||||||||| ||| ||||    
T  13385188 ttgcttcccacctttgtcacta 13385167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
Q  142 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 241  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  242 tgcttcccacctctgttacta 262  Q
    |||||||||| ||||| ||||    
T  13454243 tgcttcccacttctgtaacta 13454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 13454015 - 13454089
Alignment:
Q  14 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 88  Q
    |||||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454015 catcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
Q  16 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 95  Q
    ||||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393641 tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 13393477 - 13393403
Alignment:
Q  180 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctc 254  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| |||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctc 13393403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  34 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga 108  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  211 actttgtctccaactttaaacttttttactttgcttcccac 251  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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